Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G110200 Prunus persica HOM05D005925 ORTHO05D007270 4.2e-164 581.3 283 100.0
MD10G1085900 Malus domestica HOM05D005925 ORTHO05D007270 1.9e-145 519.2 283 88.7
FvH4_5g27360 Fragaria vesca HOM05D005925 ORTHO05D007270 2.9e-141 505.4 283 83.4
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.9e-140 502.7 294 81.6
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.6e-139 498.0 294 80.6
RcHm_v2.0_Chr6g0261021 Rosa chinensis HOM05D005925 ORTHO05D007270 1.8e-135 486.1 283 80.6
Manes.17G097200 Manihot esculenta HOM05D005925 ORTHO05D007270 2.9e-133 478.8 283 79.9
Cfa004956 Carpinus fangiana HOM05D005925 ORTHO05D007270 4.1e-127 458.4 283 76.7
QL11p039405 Quercus lobata HOM05D005925 ORTHO05D007270 2.6e-126 455.7 282 76.2
GSVIVG01031883001 Vitis vinifera HOM05D005925 ORTHO05D007270 7.7e-126 454.1 283 74.9
CiPaw.05G059200 Carya illinoinensis HOM05D005925 ORTHO05D007270 2.9e-125 452.2 283 75.3
Duzib248G1621 Durio zibethinus HOM05D005925 ORTHO05D007270 8.5e-125 450.7 283 75.6
Thecc.02G029300 Theobroma cacao HOM05D005925 ORTHO05D007270 6.1e-123 444.5 283 73.5
Gorai.005G263900 Gossypium raimondii HOM05D005925 ORTHO05D007270 1.4e-122 443.4 283 74.6
Gohir.A03G214300 Gossypium hirsutum HOM05D005925 ORTHO05D007270 2.3e-122 442.6 283 74.6
Gohir.D02G235800 Gossypium hirsutum HOM05D005925 ORTHO05D007270 3.9e-122 441.8 283 74.2
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.0e-121 439.5 266 79.7
vmacro22671 Vaccinium macrocarpon HOM05D005925 ORTHO05D007270 7.4e-121 437.6 283 72.8
TWI31G0896 Tripterygium wilfordii HOM05D005925 ORTHO05D007270 1.3e-120 436.8 283 73.1
HanXRQChr10g0307581 Helianthus annuus HOM05D005925 ORTHO05D007270 4.8e-120 434.9 283 72.8
Sc14g0001730 Simmondsia chinensis HOM05D005925 ORTHO05D007270 2.4e-119 432.6 284 71.8
PGR142G0964 Punica granatum HOM05D005925 ORTHO05D007270 3.1e-119 432.2 283 73.1
QL09p038983 Quercus lobata HOM05D005925 ORTHO05D007270 1.2e-118 430.3 262 77.5
TAR628G0202 Trochodendron aralioides HOM05D005925 ORTHO05D007270 1.2e-118 430.3 283 72.4
Rhsim05G0078300 Rhododendron simsii HOM05D005925 ORTHO05D007270 4.5e-118 428.3 283 72.4
Lj3g0007485 Lotus japonicus HOM05D005925 ORTHO05D007270 1.1e-116 423.7 283 72.1
Lsat_1_v5_gn_5_117341 Lactuca sativa HOM05D005925 ORTHO05D007270 1.9e-116 422.9 283 71.0
Lalb_Chr01g0002931 Lupinus albus HOM05D005925 ORTHO05D007270 1.9e-116 422.9 283 72.8
Actinidia17837 Actinidia chinensis HOM05D005925 ORTHO05D007270 9.4e-116 420.6 283 70.0
Potri.004G148500 Populus trichocarpa HOM05D005925 ORTHO05D007270 1.2e-115 420.2 283 71.7
COL.COLO4_17783 Corchorus olitorius HOM05D005925 ORTHO05D007270 2.7e-115 419.1 263 73.0
Eucgr.I01229 Eucalyptus grandis HOM05D005925 ORTHO05D007270 3.6e-115 418.7 283 71.7
Ca_20823_v3 Cicer arietinum L. HOM05D005925 ORTHO05D007270 4.7e-115 418.3 283 70.3
Medtr4g068475 Medicago truncatula HOM05D005925 ORTHO05D007270 6.1e-115 417.9 283 70.3
Potri.004G148700 Populus trichocarpa HOM05D005925 ORTHO05D007270 8.0e-115 417.5 283 71.4
Ciclev10029009m.g Citrus clementina HOM05D005925 ORTHO05D007270 1.0e-114 417.2 283 70.0
Glyma.11G122900 Glycine max HOM05D005925 ORTHO05D007270 1.0e-114 417.2 283 72.1
CANSAT25G2034 Cannabis sativa HOM05D005925 ORTHO05D007270 2.3e-114 416.0 283 68.6
Glyma.12G047700 Glycine max HOM05D005925 ORTHO05D007270 2.3e-114 416.0 283 71.7
TPR.G10224 Trifolium pratense HOM05D005925 ORTHO05D007270 2.3e-114 416.0 283 69.3
Hund00298 Selenicereus undatus HOM05D005925 ORTHO05D007270 3.0e-114 415.6 283 68.6
Hund00305 Selenicereus undatus HOM05D005925 ORTHO05D007270 3.0e-114 415.6 283 68.6
Phvul.011G049700 Phaseolus vulgaris HOM05D005925 ORTHO05D007270 8.8e-114 414.1 283 70.3
VMungo1127G2028 Vigna mungo HOM05D005925 ORTHO05D007270 8.8e-114 414.1 284 70.4
ECA234G0394 Erigeron canadensis HOM05D005925 ORTHO05D000001 9.7e-113 410.6 272 69.9
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.7e-112 408.7 255 77.6
arahy.Tifrunner.gnm1.ann1.JZQ5CR Arachis hypogaea HOM05D005925 ORTHO05D007270 1.1e-111 407.1 284 71.1
Psat7g207080 Pisum sativum HOM05D005925 ORTHO05D007270 1.4e-111 406.8 283 68.6
Oeu034077.1 Olea europaea HOM05D005925 ORTHO05D007270 1.8e-111 406.4 283 68.2
Solyc01g109130.3 Solanum lycopersicum HOM05D005925 ORTHO05D007270 3.1e-111 405.6 283 68.9
Sopen01g051330 Solanum pennellii HOM05D005925 ORTHO05D007270 3.1e-111 405.6 283 68.9
DCAR_003633 Daucus carota HOM05D005925 ORTHO05D007270 4.1e-111 405.2 286 67.5
arahy.Tifrunner.gnm1.ann1.EU6551 Arachis hypogaea HOM05D005925 ORTHO05D007270 5.3e-111 404.8 284 70.8
Migut.N01222 Erythranthe guttata HOM05D005925 ORTHO05D007270 1.6e-110 403.3 284 67.6
Ah.01g019810 Amaranthus hybridus HOM05D005925 ORTHO05D007270 8.5e-109 397.5 284 65.5
Peaxi162Scf00016g01229 Petunia axillaris HOM05D005925 ORTHO05D007270 8.5e-109 397.5 283 67.1
Aqoxy5G01754 Aquilegia oxysepala HOM05D005925 ORTHO05D007270 1.1e-108 397.1 283 68.2
CAN.G322.90 Capsicum annuum HOM05D005925 ORTHO05D007270 1.1e-108 397.1 283 66.8
Lj9C365T5 Lonicera japonica HOM05D005925 ORTHO05D007270 1.1e-108 397.1 256 73.8
PSO170G4903 Papaver somniferum HOM05D005925 ORTHO05D007270 1.9e-108 396.4 283 67.5
CsaV3_7G010150 Cucumis sativus L. HOM05D005925 ORTHO05D007270 4.2e-108 395.2 283 67.1
ClCG02G005470 Citrullus lanatus HOM05D005925 ORTHO05D007270 7.2e-108 394.4 291 65.3
PGSC0003DMG400025833 Solanum tuberosum HOM05D005925 ORTHO05D007270 9.4e-108 394.0 283 68.2
Nitab4.5_0012894g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 1.2e-107 393.7 293 66.6
Sed0018300 Sechium edule HOM05D005925 ORTHO05D007270 1.2e-107 393.7 283 66.4
MELO3C018414.2 Cucumis melo HOM05D005925 ORTHO05D007270 1.6e-107 393.3 283 67.1
PSO700G0338 Papaver somniferum HOM05D005925 ORTHO05D007270 1.6e-107 393.3 283 67.1
RcHm_v2.0_Chr6g0260971 Rosa chinensis HOM05D005925 ORTHO05D007270 3.6e-107 392.1 283 67.8
THA.LOC104803449 Tarenaya hassleriana HOM05D005925 ORTHO05D007270 4.7e-107 391.7 283 66.4
Cc02_g18140 Coffea canephora HOM05D005925 ORTHO05D007270 8.0e-107 391.0 283 64.3
SalBow1G0951 Salvia bowleyana HOM05D005925 ORTHO05D007270 2.3e-106 389.4 283 66.4
ATR0733G151 Amborella trichopoda HOM05D005925 ORTHO05D007270 5.7e-105 384.8 283 62.9
SGA_v2.0_scaffold55G19820 Striga asiatica HOM05D005925 ORTHO05D007270 5.7e-105 384.8 283 64.0
MSTRG.27750 Avicennia marina HOM05D005925 ORTHO05D007270 2.8e-104 382.5 283 63.3
AT3G18940 Arabidopsis thaliana HOM05D005925 ORTHO05D007270 8.2e-104 380.9 283 65.0
FvH4_2g07422 Fragaria vesca HOM05D005925 ORTHO05D007270 8.2e-104 380.9 254 73.6
SalBow3G3631 Salvia bowleyana HOM05D005925 ORTHO05D007270 1.1e-103 380.6 283 65.0
AL3G32330 Arabidopsis lyrata HOM05D005925 ORTHO05D007270 1.8e-103 379.8 283 65.4
Sabra04G0098600 Salix brachista HOM05D005925 ORTHO05D007270 5.3e-103 378.3 353 56.7
Sp3g17030 Schrenkiella parvula HOM05D005925 ORTHO05D007270 5.3e-103 378.3 283 65.4
Haze_02451 Corylus avellana HOM05D005925 ORTHO05D007270 1.2e-102 377.1 273 69.2
Thhalv10021280m.g Eutrema salsugineum HOM05D005925 ORTHO05D007270 1.2e-102 377.1 283 65.7
EL10Ac9g21785 Beta vulgaris HOM05D005925 ORTHO05D007270 2.7e-102 375.9 261 66.3
A03p40910 Brassica napus HOM05D005925 ORTHO05D007270 4.5e-102 375.2 284 65.1
A05p30640 Brassica napus HOM05D005925 ORTHO05D007270 4.5e-102 375.2 283 64.7
BraA03t13250Z Brassica rapa HOM05D005925 ORTHO05D007270 4.5e-102 375.2 284 65.1
Carub.0003s1876 Capsella rubella HOM05D005925 ORTHO05D007270 5.9e-102 374.8 283 65.0
CARHR094360 Cardamine hirsuta HOM05D005925 ORTHO05D007270 5.9e-102 374.8 283 65.0
CDE01G0621 Ceratophyllum demersum HOM05D005925 ORTHO05D007270 7.7e-102 374.4 283 63.3
Aa31LG8G5780 Aethionema arabicum HOM05D005925 ORTHO05D007270 1.7e-101 373.2 283 66.1
Nn6g32156 Nelumbo nucifera HOM05D005925 ORTHO05D007270 2.9e-101 372.5 257 69.3
BcaB06g25946 Brassica carinata HOM05D005925 ORTHO05D007270 6.5e-101 371.3 283 64.7
C05p46520 Brassica napus HOM05D005925 ORTHO05D007270 3.2e-100 369.0 283 64.0
Hma1.2p1_0584F.1_g183295 Hydrangea macrophylla HOM05D005925 ORTHO05D007270 2.1e-99 366.3 257 70.0
AUR62011394 Chenopodium quinoa HOM05D005925 ORTHO05D007270 4.4e-97 358.6 254 66.5
MBI16_g31334_MAGBIO Magnolia biondii HOM05D005925 ORTHO05D007270 5.7e-97 358.2 311 57.9
Os03g0766900 Oryza sativa ssp. japonica HOM05D005925 ORTHO05D007270 1.6e-91 340.1 283 56.5
Actinidia27921 Actinidia chinensis HOM05D005925 ORTHO05D007270 2.0e-89 333.2 284 60.6
Dinv23574 Davidia involucrata HOM05D005925 ORTHO05D007270 6.3e-88 328.2 207 73.4
Zm00001eb058630 Zea mays HOM05D005925 ORTHO05D007270 2.4e-87 326.2 263 57.8
SGA_v2.0_scaffold13G06566 Striga asiatica HOM05D005925 ORTHO05D007270 3.5e-86 322.4 263 58.9
BcaC01g03666 Brassica carinata HOM05D005925 ORTHO05D007270 1.3e-85 320.5 283 58.3
unitig_8.g3429 Utricularia gibba HOM05D005925 ORTHO05D007270 3.8e-85 318.9 263 59.7
Nitab4.5_0008189g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 5.0e-85 318.5 289 56.7
FAN15G3711 Fragaria x ananassa HOM05D001143 ORTHO05D001457 5.6e-84 315.1 193 79.8
C03p49920 Brassica napus HOM05D005925 ORTHO05D007270 1.2e-83 313.9 241 64.7
BolC3t17285H Brassica oleracea HOM05D005925 ORTHO05D007270 1.2e-83 313.9 241 64.7
BcaB04g19013 Brassica carinata HOM05D005925 ORTHO05D007270 4.0e-82 308.9 264 61.0
FAN24G2811 Fragaria x ananassa HOM05D001143 ORTHO05D007270 1.6e-75 287.0 215 67.9
Cpa.g.sc62.88 Carica papaya HOM05D005925 ORTHO05D007270 4.9e-72 275.4 188 67.6
Pp3c2_22470 Physcomitrium patens HOM05D005925 ORTHO05D007270 3.0e-69 266.2 285 47.7
Pp3c2_22478 Physcomitrium patens HOM05D005925 ORTHO05D007270 3.0e-69 266.2 285 47.7
HPP92_015723 Vanilla planifolia HOM05D005925 ORTHO05D007270 8.1e-67 258.1 217 55.3
Haze_02453 Corylus avellana HOM05D005925 ORTHO05D007270 3.4e-57 226.1 185 63.8
Mapoly0073s0081 Marchantia polymorpha HOM05D005925 ORTHO05D007270 4.4e-57 225.7 284 42.6
SMO115G0205 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 1.9e-55 220.3 278 42.8
Atru.chr5.2901 Acer truncatum HOM05D005925 ORTHO05D007270 1.5e-52 210.7 134 73.9
BolC5t33380H Brassica oleracea HOM05D005925 ORTHO05D007270 3.5e-46 189.5 134 70.1
RcHm_v2.0_Chr7g0218511 Rosa chinensis HOM05D005925 ORTHO05D007270 5.1e-45 185.7 200 51.5
BraA05t21906Z Brassica rapa HOM05D005925 ORTHO05D007270 1.5e-44 184.1 134 67.9
SEGI_41274 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 3.4e-41 172.9 156 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3883 Anthoceros agrestis HOM05D005925 ORTHO05D007270 2.3e-37 160.2 185 43.8
CBR_g26043 Chara braunii HOM05D005925 ORTHO05D007270 1.1e-36 157.9 342 31.0
FvH4_5g16250 Fragaria vesca HOM05D005925 ORTHO05D007270 1.1e-36 157.9 95 77.9
Atru.chr5.2902 Acer truncatum HOM05D005925 ORTHO05D007270 5.3e-34 149.1 87 74.7
FAN18G0119 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.6e-30 137.5 86 74.4
SEGI_01484 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 2.5e-28 130.2 96 64.6
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 2.4e-26 123.6 148 47.3
MCO11G864 Micromonas commoda HOM05D005925 ORTHO05D007270 4.0e-26 122.9 304 33.2
FAN20G1704 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.8e-24 116.3 66 78.8
SMO115G0183 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 3.2e-23 113.2 160 39.4
Cre09.g399589 Chlamydomonas reinhardtii HOM05D005925 ORTHO05D007270 1.7e-11 74.3 248 28.6


User provided reference genes

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