Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.4e-146 522.3 299 100.0
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 3.3e-111 405.6 299 75.3
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 2.1e-110 402.9 299 70.2
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-104 383.3 299 67.6
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.4e-100 369.0 299 75.6
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 7.6e-100 367.9 299 75.9
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 8.2e-94 347.8 300 69.0
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 3.2e-90 335.9 309 64.4
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 2.0e-84 316.6 309 63.4
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.4e-82 310.5 343 56.3
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.6e-81 305.8 209 75.6
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 8.2e-78 294.7 211 70.6
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 2.4e-77 293.1 311 52.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 2.0e-76 290.0 314 52.2
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 7.7e-76 288.1 213 70.0
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 3.8e-75 285.8 313 55.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 5.5e-74 282.0 329 54.4
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 9.4e-74 281.2 312 55.1
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 9.4e-74 281.2 310 55.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.2e-73 280.8 307 50.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.2e-73 280.8 303 52.1
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.6e-73 280.4 305 53.8
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 2.1e-73 280.0 312 52.2
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 3.6e-73 279.3 204 69.6
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 3.6e-73 279.3 307 56.4
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.8e-72 276.9 325 49.8
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 3.0e-72 276.2 308 60.1
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.9e-72 275.8 303 50.8
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 6.7e-72 275.0 309 51.1
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 5.7e-71 271.9 311 53.1
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 7.4e-71 271.6 312 51.3
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 7.4e-71 271.6 322 48.4
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 9.7e-71 271.2 307 51.5
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.7e-70 270.4 311 56.3
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.4e-69 266.5 325 51.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.1e-69 266.2 323 49.8
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 7.0e-69 265.0 303 48.8
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 9.1e-69 264.6 317 48.9
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.2e-68 264.2 304 51.0
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.2e-68 264.2 328 52.1
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.5e-68 262.7 306 50.0
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 4.5e-68 262.3 307 49.2
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 7.7e-68 261.5 318 47.8
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.0e-67 261.2 308 54.5
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 8.5e-67 258.1 312 49.7
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 8.5e-67 258.1 309 54.0
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 1.9e-66 256.9 306 58.5
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 5.5e-66 255.4 309 55.0
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.2e-65 254.2 302 57.3
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 1.6e-65 253.8 308 52.9
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.1e-65 253.4 309 49.8
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 6.1e-65 251.9 325 51.4
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 6.1e-65 251.9 312 48.4
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.4e-64 250.8 312 47.4
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 4.0e-64 249.2 312 47.8
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 6.7e-64 248.4 303 56.4
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 9.7e-63 244.6 309 50.5
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.3e-62 244.2 312 51.6
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.3e-62 244.2 239 54.8
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 1.3e-62 244.2 313 49.8
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 4.8e-62 242.3 318 49.1
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.4e-61 240.0 304 48.4
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 2.0e-60 236.9 304 47.4
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 2.7e-60 236.5 304 47.4
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 4.5e-60 235.7 340 42.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.7e-59 233.8 363 43.0
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.5e-58 229.9 308 45.5
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 4.2e-58 229.2 305 45.2
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 7.2e-58 228.4 306 45.1
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 9.4e-58 228.0 302 46.4
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.7e-57 226.5 317 43.2
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.6e-57 226.1 349 42.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 3.6e-57 226.1 308 44.5
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.4e-56 224.2 220 54.1
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 8.8e-56 221.5 320 43.1
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 8.8e-56 221.5 310 43.2
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 8.8e-56 221.5 310 43.2
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.0e-55 220.3 302 46.7
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 2.6e-55 219.9 303 43.9
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.4e-55 219.5 312 44.2
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 9.8e-55 218.0 304 45.1
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 2.2e-54 216.9 305 46.6
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.8e-54 216.5 317 44.2
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 4.8e-54 215.7 314 42.0
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 4.8e-54 215.7 307 43.0
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.1e-53 214.5 302 41.4
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 3.1e-53 213.0 306 49.3
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 5.4e-53 212.2 312 42.3
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 7.0e-53 211.8 308 47.7
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.2e-52 211.1 305 42.0
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 5.9e-52 208.8 305 42.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 7.7e-52 208.4 312 46.5
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 7.7e-52 208.4 296 44.9
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.0e-51 208.0 312 42.0
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.7e-51 207.2 215 54.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 5.0e-51 205.7 321 42.4
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.9e-50 203.8 301 43.2
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.9e-50 203.8 301 43.2
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.9e-50 203.8 237 48.9
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.9e-50 203.8 303 43.2
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 4.2e-50 202.6 314 43.9
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 5.5e-50 202.2 303 42.9
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.2e-49 201.1 303 43.6
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 1.6e-49 200.7 302 43.0
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.1e-49 200.3 313 42.2
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.1e-49 200.3 299 41.8
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 8.0e-49 198.4 302 40.1
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 5.2e-48 195.7 304 45.4
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 5.2e-48 195.7 304 45.4
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 8.9e-48 194.9 306 40.8
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 8.9e-48 194.9 301 42.9
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 9.8e-47 191.4 302 42.7
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 8.3e-46 188.3 316 39.2
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 8.3e-46 188.3 316 39.2
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 8.3e-46 188.3 316 39.2
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-45 188.0 302 42.4
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 2.4e-45 186.8 312 40.4
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 4.5e-44 182.6 305 43.3
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.3e-43 180.3 306 40.5
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.9e-42 177.2 302 39.4
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 7.3e-42 175.3 318 37.1
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 6.1e-41 172.2 301 40.5
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 8.0e-41 171.8 219 43.4
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 8.9e-40 168.3 310 38.4
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 3.4e-39 166.4 273 48.7
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.9e-38 163.3 320 40.0
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 4.9e-38 162.5 279 37.6
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 1.3e-35 154.5 201 43.3
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.9e-34 150.6 301 37.2
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.1e-32 144.8 329 35.9
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 6.4e-30 135.6 183 51.9
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 3.2e-29 133.3 159 49.1
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 9.5e-26 121.7 362 30.4
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-23 114.4 300 34.0
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.5e-23 114.4 300 34.0
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 1.7e-22 110.9 153 44.4
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.2e-22 110.5 91 61.5
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 2.9e-22 110.2 172 48.3
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-21 106.7 352 30.4
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 6.6e-19 99.0 130 46.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.6e-19 99.0 360 28.6
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-18 96.7 358 30.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.5e-18 95.1 375 25.1
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.1e-17 94.0 347 29.4
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 1.4e-16 91.3 152 38.2
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.8e-16 90.9 73 60.3
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-15 87.4 371 26.1
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.3e-14 84.7 336 26.2
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.7e-14 84.3 121 40.5
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.6e-09 67.8 53 69.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.1e-09 67.4 329 24.6
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.6e-09 66.6 39 82.1
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.8e-08 64.3 224 29.5
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 2.0e-07 60.8 87 42.5
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.4e-07 59.7 196 25.5
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.9e-06 56.2 189 28.0


User provided reference genes

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