Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 0.0e+00 1127.5 570 100.0
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.6e-290 1001.5 568 89.4
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 3.2e-280 968.0 569 86.5
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 9.3e-264 913.3 570 81.6
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 5.8e-250 867.5 570 78.1
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 1.9e-248 862.4 571 76.0
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.8e-244 847.8 584 75.5
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.4e-243 845.5 566 74.4
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 6.5e-241 837.4 575 74.1
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.2e-240 835.1 583 75.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 7.2e-240 833.9 562 74.2
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.6e-239 832.8 570 72.1
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 1.6e-239 832.8 562 74.9
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.1e-239 832.4 570 74.0
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.4e-238 829.7 565 73.6
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.8e-238 829.3 570 74.7
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 5.1e-238 827.8 571 73.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.1e-238 827.8 570 75.1
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.5e-237 826.2 570 73.9
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.5e-237 825.5 565 73.1
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 7.4e-237 823.9 557 74.7
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.3e-236 823.2 570 72.1
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 4.8e-236 821.2 569 75.2
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.8e-235 819.3 570 71.8
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.2e-234 816.6 570 71.9
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 4.5e-234 814.7 566 73.1
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.3e-233 813.1 568 72.2
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 2.9e-233 812.0 572 71.0
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.1e-232 810.1 558 74.2
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.1e-232 810.1 563 72.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.6e-231 805.1 534 76.6
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 6.1e-231 804.3 571 71.1
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 6.1e-231 804.3 572 69.8
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 1.8e-230 802.7 558 73.8
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 9.7e-229 797.0 567 71.1
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 9.7e-229 797.0 557 71.3
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.3e-228 796.6 555 71.2
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 4.8e-228 794.7 520 74.8
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 6.3e-228 794.3 572 71.2
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.4e-227 793.1 567 70.9
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.4e-227 792.3 551 74.0
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 4.1e-227 791.6 557 70.2
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 3.5e-226 788.5 557 72.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 3.5e-226 788.5 505 77.2
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 3.8e-225 785.0 546 71.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.5e-224 783.1 535 75.3
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 3.2e-224 781.9 566 71.6
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.2e-224 781.9 559 72.6
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 3.2e-224 781.9 553 71.1
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.7e-223 778.9 536 73.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 8.0e-223 777.3 519 74.6
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.4e-222 776.5 576 70.8
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.1e-221 773.5 573 68.2
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 5.7e-221 771.2 514 73.7
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 9.7e-221 770.4 514 74.3
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 9.7e-221 770.4 555 70.1
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.3e-220 770.0 547 70.7
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 2.8e-220 768.8 575 69.7
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 1.1e-219 766.9 543 71.3
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.8e-219 766.1 547 70.4
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.4e-219 765.8 561 69.5
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 5.3e-219 764.6 517 72.5
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 7.0e-219 764.2 547 70.6
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 7.0e-219 764.2 570 70.5
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.2e-218 763.5 541 71.3
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 2.7e-218 762.3 526 71.1
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 3.5e-218 761.9 526 74.0
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.0e-217 760.4 561 69.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.9e-217 758.8 512 73.6
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.9e-217 758.8 516 72.9
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 5.0e-217 758.1 536 72.2
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 5.0e-217 758.1 539 71.1
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 8.5e-217 757.3 516 72.9
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.1e-216 756.9 567 68.8
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.9e-216 756.1 534 71.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.2e-216 755.4 573 68.6
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 7.2e-216 754.2 534 71.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.7e-215 752.3 555 69.2
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 8.0e-215 750.7 542 69.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 8.0e-215 750.7 523 71.9
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.7e-213 744.6 513 73.7
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 5.7e-213 744.6 519 70.7
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.5e-213 744.2 562 67.4
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 2.8e-212 742.3 610 64.4
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.1e-211 740.3 528 71.8
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.1e-211 738.8 512 73.0
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.1e-211 738.8 484 75.6
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 2.0e-210 736.1 523 70.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 3.2e-208 728.8 536 68.8
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 2.6e-205 719.2 492 72.4
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 3.4e-205 718.8 428 79.7
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 7.5e-205 717.6 482 73.7
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 7.5e-205 717.6 462 76.0
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 1.1e-203 713.8 507 69.4
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 4.1e-203 711.8 582 65.1
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.9e-201 705.7 495 71.5
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 9.8e-197 690.6 570 66.0
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.6e-183 646.7 372 84.9
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.1e-179 634.0 502 62.7
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.4e-179 632.9 420 73.6
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 1.4e-166 590.5 386 77.2
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 1.6e-154 550.4 436 61.2
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.1e-152 544.3 440 58.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.3e-152 542.7 381 71.7
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.8e-151 539.7 435 65.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 3.3e-144 516.2 437 57.7
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.9e-136 490.3 439 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 1.4e-113 414.5 508 44.9
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 5.3e-110 402.5 524 45.8
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.9e-108 396.7 538 45.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 7.2e-107 392.1 450 48.9
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 9.4e-107 391.7 538 44.6
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.7e-106 390.2 555 42.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 5.3e-102 375.9 483 43.9
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 2.0e-101 374.0 523 45.1
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.7e-101 372.1 537 44.9
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 3.8e-100 369.8 255 72.5
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.0e-97 359.8 527 45.0
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 2.0e-80 304.3 176 80.1
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 3.4e-80 303.5 520 37.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 8.9e-73 278.9 169 77.5
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 5.8e-56 223.0 223 59.6
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 4.3e-51 206.8 162 65.4
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.2e-42 176.4 131 69.5
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 3.2e-38 164.1 138 60.9
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.0e-32 144.8 86 81.4
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.3e-28 132.1 105 64.8
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.6e-24 117.9 141 44.7
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 6.5e-23 113.2 104 62.5
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-20 105.5 58 87.9
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.4e-17 94.7 153 48.4
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 2.2e-15 88.2 125 47.2
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.5e-14 83.6 112 47.3
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 3.0e-12 77.8 152 42.1
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 7.4e-11 73.2 154 42.2
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 5.9e-08 63.5 38 78.9


User provided reference genes

Program Settings