Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 4.6e-236 820.8 420 100.0
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 3.6e-196 688.3 426 83.6
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 3.6e-188 661.8 426 79.6
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.7e-185 652.9 427 79.2
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 1.8e-184 649.4 427 78.7
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 9.2e-176 620.5 420 76.9
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-170 603.6 427 75.2
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 7.3e-165 584.3 427 72.4
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.5e-162 576.6 429 70.9
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.9e-160 569.7 426 71.4
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 9.2e-160 567.4 426 69.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.2e-159 567.0 426 69.2
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 1.6e-156 556.6 426 68.8
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 3.4e-154 548.9 405 69.9
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 3.8e-153 545.4 430 64.7
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.9e-152 543.1 426 67.8
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 3.2e-152 542.3 397 68.5
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.3e-150 537.0 428 63.1
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.7e-150 536.6 425 64.7
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 2.3e-150 536.2 426 66.0
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 6.6e-150 534.6 393 71.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 6.2e-148 528.1 429 64.1
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 2.4e-147 526.2 391 67.0
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 9.0e-147 524.2 430 63.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 2.0e-146 523.1 397 66.8
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.8e-145 518.8 390 67.4
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 4.9e-145 518.5 384 68.5
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 3.2e-144 515.8 390 67.9
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 7.8e-143 511.1 397 65.5
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.7e-142 510.0 385 66.8
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 5.1e-142 508.4 385 66.5
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 8.7e-142 507.7 397 65.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 4.3e-141 505.4 460 61.7
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 6.9e-139 498.0 409 61.6
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.2e-138 497.3 389 65.0
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.2e-137 493.0 391 65.5
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 3.8e-137 492.3 373 67.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 2.1e-135 486.5 376 67.3
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 6.0e-135 485.0 397 64.0
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.3e-134 483.8 427 60.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.3e-134 483.0 395 64.1
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.5e-133 479.6 390 62.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 3.3e-133 479.2 386 64.2
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 5.6e-133 478.4 450 58.0
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 5.6e-133 478.4 390 62.8
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 9.6e-133 477.6 449 61.0
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.6e-132 476.9 391 62.7
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.6e-132 476.9 391 63.9
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 3.7e-132 475.7 391 61.9
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 4.8e-132 475.3 391 63.2
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 6.2e-132 474.9 432 60.0
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.1e-131 474.2 390 62.3
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 1.1e-131 474.2 426 58.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.9e-130 467.6 391 61.4
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.3e-129 467.2 391 62.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.2e-129 466.5 423 60.3
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 9.3e-128 461.1 355 65.6
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.9e-125 453.4 380 64.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 4.3e-125 452.2 431 55.5
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 1.4e-123 447.2 389 57.6
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 6.9e-123 444.9 390 57.4
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.2e-122 444.1 419 58.2
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.5e-122 443.7 390 57.4
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 7.6e-122 441.4 391 56.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 7.6e-122 441.4 382 58.1
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.0e-121 441.0 423 56.5
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.5e-119 432.6 385 59.2
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.3e-118 429.9 330 67.3
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.7e-118 428.3 351 65.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 9.7e-117 424.5 372 59.9
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 4.5e-114 415.6 381 56.2
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 5.9e-114 415.2 321 65.4
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 6.5e-113 411.8 382 57.1
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 2.5e-112 409.8 387 55.0
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.2e-111 407.5 382 56.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 4.6e-111 405.6 433 51.3
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 2.3e-110 403.3 384 55.5
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.1e-109 401.0 382 55.2
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.9e-109 400.2 393 57.8
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 5.7e-109 398.7 381 54.6
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 2.2e-108 396.7 394 54.3
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.8e-108 396.4 380 56.6
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.8e-107 393.7 380 56.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.1e-107 392.9 392 57.4
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 5.3e-107 392.1 380 56.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.2e-106 391.0 380 56.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 3.4e-106 389.4 380 55.8
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 6.5e-105 385.2 380 55.5
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.2e-104 381.7 337 59.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 9.4e-104 381.3 397 54.7
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.6e-103 379.4 337 59.6
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.8e-102 377.1 418 50.0
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 5.1e-102 375.6 373 53.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.7e-100 370.5 383 52.0
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.9e-96 357.1 287 64.8
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.5e-96 356.7 402 51.0
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.6e-93 346.7 424 46.7
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 5.0e-89 332.4 327 55.7
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.5e-85 320.9 400 46.5
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.1e-83 313.2 349 50.4
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.3e-81 307.8 370 48.6
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.7e-76 290.8 308 52.3
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.9e-72 277.3 317 48.3
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.6e-71 274.2 414 41.5
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.2e-69 268.1 345 44.9
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.1e-59 235.0 394 37.3
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.9e-59 234.2 366 40.4
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.0e-59 232.3 251 50.2
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 2.6e-53 213.8 324 39.5
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.4e-46 191.4 188 54.3
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.9e-41 173.3 151 56.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 6.6e-41 172.6 191 50.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.1e-38 165.2 178 52.8
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.4e-37 160.2 366 33.3
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.7e-36 157.9 168 53.0
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.7e-36 157.9 168 53.0
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 4.9e-36 156.4 372 32.8
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.3e-33 148.3 111 64.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.3e-32 143.7 159 49.1
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 5.6e-32 142.9 154 52.6
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.6e-31 141.4 340 30.9
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.1e-31 141.0 73 90.4
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 3.1e-30 137.1 242 37.2
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.4e-29 133.3 104 67.3
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.4e-28 129.0 89 75.3
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 2.1e-26 124.4 92 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.1e-25 119.8 123 45.5
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.5e-24 117.5 106 62.3
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.4e-22 110.9 115 52.2
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.4e-19 100.9 109 56.0
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.3e-17 94.4 69 69.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.3e-17 94.4 69 69.6
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 1.9e-08 64.7 68 52.9
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 2.5e-08 64.3 68 52.9
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 1.3e-07 62.0 258 26.4
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 1.6e-07 61.6 42 76.2
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 6.9e-06 56.2 35 71.4
Aqoxy3G01072 Aquilegia oxysepala HOM05D000559 ORTHO05D000596 9.0e-06 55.8 215 25.6


User provided reference genes

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