Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 4.5e-89 331.3 169 100.0
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.4e-69 266.5 141 96.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 6.3e-59 231.1 142 85.2
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.4e-53 213.4 143 78.3
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 7.5e-52 207.6 143 76.2
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.5e-52 207.6 143 76.2
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.1e-46 189.5 144 69.4
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.6e-46 188.7 144 69.4
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 4.0e-45 185.3 143 68.5
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 8.8e-45 184.1 143 65.7
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.8e-43 179.1 137 65.7
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.1e-42 177.2 143 61.5
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.1e-42 175.3 146 63.0
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-41 173.7 145 64.1
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.7e-40 169.9 143 63.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 3.8e-40 168.7 146 58.9
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 8.6e-40 167.5 156 59.0
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.1e-39 167.2 142 62.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.5e-39 166.8 142 62.0
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 2.5e-39 166.0 146 63.0
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.6e-38 163.3 143 61.5
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 2.1e-38 162.9 143 60.8
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.1e-38 162.9 143 58.7
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 3.6e-38 162.2 143 55.9
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.1e-38 161.4 146 56.8
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.0e-37 160.6 143 62.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.0e-37 159.1 149 55.7
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 6.8e-37 157.9 143 56.6
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 8.9e-37 157.5 143 55.2
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 5.7e-36 154.8 143 58.0
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.5e-36 154.5 143 60.1
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 7.5e-36 154.5 146 53.4
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.7e-35 153.3 146 50.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.2e-35 152.9 148 51.4
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 2.8e-35 152.5 146 52.7
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.7e-35 152.1 156 51.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 3.7e-35 152.1 150 52.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.9e-35 151.8 143 54.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.9e-35 151.8 144 54.9
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.9e-35 151.8 144 54.9
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-34 149.4 140 57.9
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 2.4e-34 149.4 146 51.4
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.1e-34 149.1 145 55.2
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.1e-34 148.7 143 60.8
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 5.4e-34 148.3 143 56.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.0e-34 147.9 141 58.2
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 7.0e-34 147.9 141 58.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 9.2e-34 147.5 143 53.1
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 2.0e-33 146.4 147 52.4
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 3.5e-33 145.6 153 53.6
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 4.5e-33 145.2 146 53.4
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 7.8e-33 144.4 143 51.7
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.3e-32 143.7 144 53.5
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.7e-32 143.3 145 52.4
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.7e-32 143.3 143 52.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.3e-32 142.9 146 53.4
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.6e-32 141.4 144 52.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 6.6e-32 141.4 144 52.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.6e-32 141.0 144 50.7
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 8.6e-32 141.0 152 51.3
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 4.3e-31 138.7 144 50.0
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 9.5e-31 137.5 146 52.7
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.1e-30 136.3 146 52.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 2.1e-30 136.3 152 53.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.1e-30 136.3 153 52.9
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.8e-30 136.0 145 51.0
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.8e-30 136.0 146 48.6
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.8e-30 136.0 143 49.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 8.0e-30 134.4 143 51.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.4e-29 133.7 145 50.3
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-29 133.7 144 51.4
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-29 133.7 144 51.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.8e-29 133.3 156 51.9
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.3e-29 132.9 140 50.0
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.1e-29 132.5 143 52.4
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 5.2e-29 131.7 145 51.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 5.2e-29 131.7 147 50.3
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.2e-28 130.6 147 51.0
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.5e-28 130.2 148 43.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.4e-28 129.0 145 48.3
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 3.4e-28 129.0 143 51.0
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 4.4e-28 128.6 145 48.3
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 5.8e-28 128.3 141 48.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.2e-27 126.3 144 51.4
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.2e-27 126.3 141 48.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.9e-27 125.9 147 49.0
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.7e-27 125.6 148 46.6
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.7e-27 125.6 144 51.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 3.7e-27 125.6 138 50.0
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.4e-27 124.8 145 49.7
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 8.3e-27 124.4 143 46.9
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.1e-26 124.0 144 49.3
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-26 123.6 143 46.9
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.9e-26 123.2 140 51.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.4e-26 122.9 144 50.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.2e-26 122.5 144 46.5
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.2e-26 122.5 144 46.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 4.1e-26 122.1 135 49.6
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 5.4e-26 121.7 149 46.3
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.6e-25 120.2 143 52.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.0e-25 119.8 111 55.0
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.7e-25 119.4 142 43.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 3.5e-25 119.0 144 47.2
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 3.5e-25 119.0 137 47.4
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 7.8e-25 117.9 136 50.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.0e-24 117.5 147 46.9
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.3e-24 117.1 163 42.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.3e-24 117.1 149 47.0
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.0e-24 115.2 145 44.8
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 5.0e-24 115.2 144 45.1
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 6.6e-24 114.8 144 43.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 6.6e-24 114.8 133 48.9
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 8.6e-24 114.4 134 44.8
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 2.5e-23 112.8 159 40.9
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 3.3e-23 112.5 132 45.5
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 9.5e-23 110.9 143 44.8
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 9.5e-23 110.9 117 53.0
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.2e-22 110.5 133 45.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.1e-22 109.8 141 44.0
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.8e-22 109.4 136 44.1
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 3.6e-22 109.0 155 40.0
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 4.7e-22 108.6 133 45.9
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 6.2e-22 108.2 134 44.8
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 6.2e-22 108.2 134 44.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 8.0e-22 107.8 141 43.3
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 8.0e-22 107.8 141 43.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 8.0e-22 107.8 135 41.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 8.0e-22 107.8 135 44.4
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-21 107.5 135 41.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.1e-21 107.5 136 41.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.3e-21 106.3 136 41.9
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 6.8e-21 104.8 136 46.3
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-20 104.0 136 41.2
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.2e-20 104.0 153 44.4
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 7.5e-20 101.3 148 39.2
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.4e-18 97.1 61 77.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.4e-18 97.1 137 42.3
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 9.2e-18 94.4 65 72.3
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.1e-17 93.2 153 40.5
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 6.6e-16 88.2 147 36.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-15 87.0 62 66.1
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.4e-13 80.5 154 35.1
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-12 77.0 52 73.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 6.4e-11 71.6 50 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 9.2e-10 67.8 136 37.5
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.7e-08 63.5 63 58.7
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.3e-08 63.2 162 31.5
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.5e-07 60.5 64 51.6


User provided reference genes

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