Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.0e-50 203.0 102 100.0
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 9.5e-40 167.5 120 74.2
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 3.5e-34 149.1 120 69.2
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 7.8e-34 147.9 122 68.0
Prupe.8G099300 Prunus persica HOM05D007556 ORTHO05D002252 7.5e-21 104.8 120 54.2
Prupe.8G099000 Prunus persica HOM05D007556 ORTHO05D002252 1.2e-15 87.4 96 53.1
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.1e-11 72.4 99 42.4
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.4e-11 72.0 89 42.7
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 5.4e-11 72.0 85 45.9
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-10 70.5 104 40.4
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 2.7e-10 69.7 104 38.5
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 3.5e-10 69.3 96 43.8
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.5e-10 69.3 86 43.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.5e-10 69.3 98 40.8
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.6e-10 68.9 98 40.8
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.6e-10 68.9 99 39.4
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 6.0e-10 68.6 99 41.4
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 7.8e-10 68.2 108 38.9
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 7.8e-10 68.2 104 42.3
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-09 67.8 104 39.4
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.0e-09 67.8 99 41.4
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.7e-09 67.0 92 45.7
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.3e-09 66.6 103 37.9
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.3e-09 66.6 106 38.7
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 3.9e-09 65.9 97 39.2
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 3.9e-09 65.9 100 40.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 5.1e-09 65.5 89 40.4
CANSAT56G4301 Cannabis sativa HOM05D007556 ORTHO05D002252 5.1e-09 65.5 98 42.9
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.1e-09 65.5 98 39.8
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 5.1e-09 65.5 91 42.9
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-09 65.5 104 39.4
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 6.6e-09 65.1 86 46.5
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 6.6e-09 65.1 106 37.7
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 8.6e-09 64.7 98 39.8
TPR.G24483 Trifolium pratense HOM05D010359 ORTHO05D002252 1.1e-08 64.3 99 38.4
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.1e-08 64.3 98 38.8
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.5e-08 63.9 102 36.3
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-08 63.9 55 50.9
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.5e-08 63.9 98 38.8
RcHm_v2.0_Chr6g0263911 Rosa chinensis HOM05D018529 ORTHO05D016305 1.9e-08 63.5 97 42.3
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.5e-08 63.2 114 37.7
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.5e-08 63.2 99 37.4
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 2.5e-08 63.2 88 43.2
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 3.3e-08 62.8 103 35.0
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.3e-08 62.4 89 38.2
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 4.3e-08 62.4 91 40.7
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 4.3e-08 62.4 89 39.3
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 4.3e-08 62.4 102 39.2
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.6e-08 62.0 97 39.2
COL.COLO4_11794 Corchorus olitorius HOM05D007556 ORTHO05D002252 7.3e-08 61.6 88 44.3
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.3e-08 61.6 89 41.6
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 7.3e-08 61.6 94 43.6
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 9.6e-08 61.2 92 40.2
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 9.6e-08 61.2 89 37.1
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.6e-08 61.2 104 36.5
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.2e-07 60.8 98 39.8
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.2e-07 60.8 104 30.8
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.2e-07 60.8 104 37.5
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 1.6e-07 60.5 71 43.7
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 2.1e-07 60.1 110 32.7
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 2.8e-07 59.7 113 37.2
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.8e-07 59.7 103 39.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.8e-07 59.7 100 35.0
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 3.6e-07 59.3 98 38.8
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 3.6e-07 59.3 88 43.2
RcHm_v2.0_Chr6g0263961 Rosa chinensis HOM05D018529 ORTHO05D016305 3.6e-07 59.3 97 40.2
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 4.7e-07 58.9 105 36.2
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 4.7e-07 58.9 100 34.0
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 4.7e-07 58.9 89 40.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 4.7e-07 58.9 89 38.2
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 6.2e-07 58.5 98 33.7
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 6.2e-07 58.5 85 38.8
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 6.2e-07 58.5 89 40.4
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 8.1e-07 58.2 90 38.9
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 8.1e-07 58.2 74 39.2
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 1.1e-06 57.8 114 32.5
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 1.1e-06 57.8 89 43.8
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 1.1e-06 57.8 99 38.4
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 1.1e-06 57.8 98 34.7
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 1.4e-06 57.4 89 38.2
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.4e-06 57.4 113 34.5
Medtr4g069810 Medicago truncatula HOM05D010359 ORTHO05D002252 1.4e-06 57.4 100 33.0
CANSAT56G0346 Cannabis sativa HOM05D007556 ORTHO05D002252 1.8e-06 57.0 111 42.3
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.8e-06 57.0 101 35.6
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.8e-06 57.0 90 40.0
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.4e-06 56.6 65 49.2
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 2.4e-06 56.6 49 49.0
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 2.4e-06 56.6 98 35.7
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 3.1e-06 56.2 86 33.7
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.1e-06 56.2 86 33.7
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.1e-06 56.2 64 46.9
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.0e-06 55.8 86 32.6
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 4.0e-06 55.8 88 43.2
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 5.2e-06 55.5 124 34.7
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 5.2e-06 55.5 101 31.7
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 5.2e-06 55.5 99 38.4
Lj3g0003579 Lotus japonicus HOM05D010359 ORTHO05D002252 5.2e-06 55.5 96 37.5
Psat0s1116g0120 Pisum sativum HOM05D010359 ORTHO05D002252 5.2e-06 55.5 95 34.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 5.2e-06 55.5 97 35.1
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 5.2e-06 55.5 88 33.0
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 5.2e-06 55.5 89 34.8
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 6.8e-06 55.1 95 34.7
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 8.9e-06 54.7 66 43.9


User provided reference genes

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