Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 4.3e-49 197.6 95 100.0
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 1.0e-42 176.4 95 91.6
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 1.1e-41 172.9 95 88.4
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.9e-36 155.6 96 80.2
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 3.2e-36 154.8 96 79.2
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.2e-36 154.8 96 79.2
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 3.2e-36 154.8 96 79.2
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-34 149.8 96 79.2
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.0e-34 149.8 96 77.1
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 2.0e-33 145.6 97 76.3
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 1.6e-30 136.0 90 76.7
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 2.9e-29 131.7 89 75.3
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 1.1e-28 129.8 93 72.0
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 1.1e-28 129.8 93 72.0
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.2e-28 128.3 90 73.3
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 5.5e-28 127.5 94 72.3
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 7.2e-28 127.1 87 72.4
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 9.4e-28 126.7 94 70.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 2.1e-27 125.6 87 71.3
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 2.3e-26 122.1 87 70.1
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 2.0e-25 119.0 94 67.0
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.7e-24 115.9 96 65.6
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 3.7e-24 114.8 94 66.0
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 4.8e-24 114.4 94 64.9
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 4.8e-24 114.4 89 69.7
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 6.3e-24 114.0 92 67.4
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 6.3e-24 114.0 92 66.3
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 1.4e-23 112.8 87 71.3
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 1.8e-23 112.5 92 66.3
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 2.4e-23 112.1 92 65.2
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 3.1e-23 111.7 85 69.4
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 9.1e-23 110.2 94 62.8
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 2.7e-22 108.6 87 66.7
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 3.5e-22 108.2 94 61.7
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 4.5e-22 107.8 91 62.6
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 4.5e-22 107.8 91 62.6
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.9e-22 107.5 94 58.5
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 7.7e-22 107.1 91 62.6
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.0e-21 106.7 65 81.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 1.7e-21 105.9 94 64.9
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 2.2e-21 105.5 114 55.3
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.2e-21 105.5 87 66.7
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 5.0e-21 104.4 94 61.7
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 8.5e-21 103.6 87 64.4
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 1.1e-20 103.2 91 60.4
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.5e-20 102.8 86 64.0
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 2.5e-20 102.1 88 60.2
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 5.5e-20 100.9 93 57.0
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 1.6e-19 99.4 94 60.6
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 1.4e-18 96.3 77 66.2
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 3.0e-18 95.1 95 61.1
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 3.0e-18 95.1 91 58.2
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 1.2e-17 93.2 80 66.2
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.0e-17 92.4 94 59.6
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 2.6e-17 92.0 63 73.0
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.4e-17 91.7 72 66.7
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 4.4e-17 91.3 94 57.4
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 9.8e-17 90.1 62 74.2
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 2.2e-16 89.0 106 50.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 2.8e-16 88.6 106 50.0
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 2.8e-16 88.6 106 50.0
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 3.7e-16 88.2 108 49.1
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 3.7e-16 88.2 107 49.5
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 1.4e-15 86.3 87 51.7
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 1.8e-15 85.9 77 59.7
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.4e-15 85.5 86 52.3
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 9.1e-15 83.6 104 50.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.6e-14 82.8 108 47.2
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 5.9e-14 80.9 88 48.9
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 7.7e-14 80.5 109 46.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 5.0e-13 77.8 89 52.8
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 8.6e-13 77.0 104 45.2
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 8.6e-13 77.0 104 45.2
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 8.6e-13 77.0 103 48.5
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 1.5e-12 76.3 104 45.2
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 1.9e-12 75.9 105 44.8
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 1.9e-12 75.9 105 44.8
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 7.2e-12 73.9 86 53.5
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 7.2e-12 73.9 106 44.3
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 5.2e-10 67.8 58 60.3
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 4.9e-08 61.2 95 44.2
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 1.2e-06 56.6 58 55.2
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 1.2e-06 56.6 51 58.8
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 1.6e-06 56.2 51 56.9
CBR_g74676 Chara braunii HOM05D002019 ORTHO05D010005 2.0e-06 55.8 49 59.2
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 2.0e-06 55.8 51 58.8
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 2.7e-06 55.5 63 44.4
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 2.7e-06 55.5 56 50.0
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 4.5e-06 54.7 51 54.9
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 4.5e-06 54.7 53 54.7
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 4.5e-06 54.7 51 56.9
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 4.5e-06 54.7 51 56.9
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 4.5e-06 54.7 51 56.9
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 5.9e-06 54.3 51 54.9
Hma1.2p1_0430F.1_g151290 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 5.9e-06 54.3 106 35.8
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 5.9e-06 54.3 75 45.3
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 7.8e-06 53.9 51 58.8
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 7.8e-06 53.9 51 58.8
Cc04_g02460 Coffea canephora HOM05D002019 ORTHO05D002150 7.8e-06 53.9 60 51.7
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 7.8e-06 53.9 51 56.9
Sc06g0000180 Simmondsia chinensis HOM05D004099 ORTHO05D004777 7.8e-06 53.9 59 45.8
TWI63G0120 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 7.8e-06 53.9 57 49.1


User provided reference genes

Program Settings