Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.2e-258 896.0 450 100.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 6.7e-249 863.6 450 96.7
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.8e-231 805.1 450 88.9
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.9e-229 797.3 451 89.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.7e-226 788.5 450 86.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.0e-225 786.6 450 86.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.4e-224 781.2 450 86.0
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.7e-223 778.1 450 85.8
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 5.0e-220 767.7 400 94.0
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 7.0e-214 747.3 430 86.3
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.5e-213 744.6 454 82.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.2e-208 729.9 448 82.6
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 2.0e-208 729.2 452 81.0
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 5.7e-208 727.6 454 80.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 3.7e-207 724.9 456 79.6
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 3.1e-206 721.8 448 81.0
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 7.0e-206 720.7 452 80.3
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 5.9e-205 717.6 453 79.2
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.8e-204 714.9 446 81.6
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 5.0e-204 714.5 460 78.7
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.5e-204 714.1 453 78.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.5e-203 713.0 473 77.4
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 5.5e-203 711.1 461 79.0
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 9.4e-203 710.3 427 82.7
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.8e-201 706.1 449 79.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.8e-201 706.1 461 78.5
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.8e-201 706.1 448 80.1
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 4.0e-201 704.9 452 77.4
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 5.2e-201 704.5 452 78.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.2e-200 703.4 452 77.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-200 703.0 452 77.0
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.5e-200 703.0 447 78.7
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 3.7e-199 698.4 450 77.3
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 8.3e-199 697.2 450 76.9
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.1e-198 696.8 451 77.2
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.4e-198 696.4 458 76.9
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.2e-197 693.3 458 74.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 7.7e-197 690.6 404 84.2
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.3e-196 689.9 473 75.7
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.8e-196 688.3 457 74.2
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 6.5e-196 687.6 458 74.5
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.1e-195 686.8 435 78.9
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 3.3e-195 685.3 461 74.4
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.2e-195 684.9 461 75.7
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 4.2e-195 684.9 420 80.2
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 7.2e-195 684.1 432 79.4
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 9.5e-195 683.7 455 74.3
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 1.6e-194 682.9 458 74.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.1e-194 682.6 461 74.2
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 2.8e-194 682.2 458 73.8
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 3.6e-194 681.8 440 78.0
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 4.7e-194 681.4 456 75.2
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 4.7e-194 681.4 404 82.4
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 6.1e-194 681.0 402 81.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 6.1e-194 681.0 475 72.8
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 6.1e-194 681.0 460 75.4
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 1.0e-193 680.2 393 84.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.4e-193 679.9 450 75.8
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.4e-193 679.9 458 74.7
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.4e-193 679.9 455 73.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.4e-193 679.9 473 74.0
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.4e-193 679.9 434 78.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 2.3e-193 679.1 456 74.6
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.0e-193 678.7 459 73.2
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.0e-193 678.7 402 81.3
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 4.0e-193 678.3 459 73.2
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.2e-193 677.9 477 73.8
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 5.2e-193 677.9 471 74.7
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 8.9e-193 677.2 439 76.3
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 8.9e-193 677.2 476 74.6
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.2e-192 676.8 384 85.7
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.0e-192 676.0 455 74.1
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.0e-192 676.0 393 84.2
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 2.6e-192 675.6 458 75.3
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.4e-192 675.2 458 73.6
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 3.4e-192 675.2 450 74.2
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.4e-192 675.2 465 75.5
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 4.4e-192 674.9 447 75.2
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 4.4e-192 674.9 472 72.5
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.5e-192 674.1 400 81.0
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 9.8e-192 673.7 383 85.4
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 9.8e-192 673.7 448 76.6
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.2e-191 672.5 454 73.8
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.8e-191 672.2 400 83.2
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 8.3e-191 670.6 386 84.7
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.1e-190 670.2 389 83.8
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.4e-190 669.8 400 80.5
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.4e-190 669.8 476 73.9
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 5.4e-190 667.9 385 84.4
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.2e-189 666.8 388 84.3
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.6e-189 666.4 456 73.0
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.0e-189 666.0 406 80.0
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 5.9e-189 664.5 460 73.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 7.8e-189 664.1 418 78.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 7.8e-189 664.1 390 83.8
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.9e-188 662.1 411 78.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.9e-188 662.1 460 73.0
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.1e-187 660.2 385 82.3
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-187 659.4 382 82.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.8e-186 655.6 387 82.2
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.7e-183 646.4 515 65.4
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 6.4e-183 644.4 433 75.1
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 3.3e-179 632.1 400 77.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 8.3e-175 617.5 388 76.8
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.4e-174 615.9 463 67.4
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.4e-168 595.5 454 68.5
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.9e-159 565.1 357 75.1
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-156 555.4 463 64.8
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 2.1e-154 549.7 459 63.2
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.1e-153 547.4 455 64.2
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 4.0e-153 545.4 407 67.8
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 6.0e-149 531.6 378 67.2
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 1.6e-146 523.5 313 84.7
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-146 523.5 305 82.6
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 5.3e-145 518.5 370 69.2
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 3.4e-144 515.8 326 81.3
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 6.7e-140 501.5 346 73.7
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.1e-138 494.6 363 71.6
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.1e-137 494.2 345 67.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.8e-137 493.4 373 63.5
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.4e-135 485.0 362 64.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.9e-134 483.4 370 65.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.0e-133 478.4 275 83.3
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.0e-129 465.7 276 80.4
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.0e-124 449.5 289 74.0
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 5.5e-118 428.7 406 57.1
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.0e-116 424.5 289 73.7
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.9e-111 406.4 252 78.2
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.1e-105 387.9 316 66.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.0e-100 371.3 212 85.8
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 5.7e-99 365.5 251 74.5
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 7.4e-99 365.2 357 53.2
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 6.5e-95 352.1 329 53.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 2.2e-90 337.0 218 76.1
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.7e-88 330.1 201 76.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 6.1e-85 318.9 228 70.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.2e-78 296.2 211 69.7
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.5e-75 285.4 174 79.9
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 4.7e-69 266.2 233 59.2
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 1.4e-65 254.6 233 57.9
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 3.3e-62 243.4 137 87.6
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.1e-61 240.7 124 87.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.1e-61 240.7 363 40.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 7.8e-56 222.2 291 43.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.1e-49 201.8 134 75.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 3.5e-40 170.2 113 77.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 3.0e-39 167.2 113 77.9
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 6.2e-37 159.5 111 70.3
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 3.1e-36 157.1 85 85.9
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.4e-35 153.7 124 64.5
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.3e-29 135.2 77 87.0
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.4e-25 121.7 86 70.9
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.6e-24 118.2 231 36.4
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 8.7e-23 112.5 117 57.3
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 1.1e-22 112.1 62 98.4
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 9.0e-20 102.4 62 90.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.1e-15 86.7 68 61.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 8.7e-15 85.9 50 76.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 2.5e-14 84.3 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 3.8e-10 70.5 44 72.7
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 2.3e-07 61.2 220 25.0


User provided reference genes

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