Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 3.0e-59 232.6 234 100.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.0e-46 191.0 262 83.6
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.5e-45 186.4 261 81.2
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.8e-43 180.3 262 82.4
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 2.3e-43 179.9 262 78.2
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.0e-43 179.5 262 79.8
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.0e-43 179.5 262 79.8
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 3.0e-43 179.5 262 78.2
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 3.0e-43 179.5 262 78.2
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 3.0e-43 179.5 260 81.5
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 6.7e-43 178.3 264 82.2
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 8.8e-43 177.9 263 81.4
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 3.3e-42 176.0 262 77.9
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-41 173.7 263 78.3
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.1e-40 171.0 260 76.2
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.4e-40 170.6 263 81.4
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.4e-40 170.6 265 80.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.4e-40 170.6 265 80.8
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 2.0e-39 166.8 265 77.7
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 2.5e-37 159.8 263 76.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.5e-37 159.8 263 77.9
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.2e-37 159.5 263 73.0
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 5.5e-37 158.7 258 70.5
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.6e-36 157.1 265 75.1
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.6e-36 156.0 260 79.2
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.5e-34 150.6 266 73.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.0e-34 150.2 268 74.3
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.4e-34 149.1 266 75.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 8.2e-33 144.8 266 66.2
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 3.1e-32 142.9 281 70.1
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.6e-31 140.6 247 72.5
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 1.6e-31 140.6 240 59.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 5.9e-31 138.7 262 68.3
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 2.9e-30 136.3 232 65.9
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.8e-30 136.0 247 71.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.1e-29 134.4 244 69.3
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 4.2e-29 132.5 261 67.8
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 5.5e-29 132.1 256 66.8
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 2.7e-28 129.8 263 70.3
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.0e-27 126.3 249 75.5
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.5e-26 124.0 250 74.4
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.5e-26 124.0 250 74.4
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-26 124.0 265 70.2
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-26 123.2 251 73.3
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.3e-26 122.9 262 68.3
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.8e-25 119.8 220 78.2
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.8e-25 119.8 263 67.7
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.2e-25 118.2 249 73.1
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 9.1e-24 114.8 262 68.3
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 5.9e-23 112.1 251 66.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-22 110.5 187 68.4
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.7e-22 110.5 250 67.6
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.7e-22 110.5 245 67.8
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.0e-22 109.0 255 63.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.1e-21 107.8 243 61.3
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.9e-21 107.1 247 66.8
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 5.5e-21 105.5 130 90.0
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 9.4e-21 104.8 247 66.4
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.1e-20 103.6 264 68.2
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 6.1e-20 102.1 262 59.2
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.1e-20 102.1 246 66.3
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.4e-19 100.9 238 45.8
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.2e-19 99.0 262 66.4
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 6.8e-19 98.6 240 66.7
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 8.8e-19 98.2 245 66.9
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 2.0e-18 97.1 265 57.7
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 2.6e-18 96.7 267 56.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 3.4e-18 96.3 130 80.0
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 3.4e-18 96.3 268 56.3
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.8e-18 94.7 265 57.7
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.7e-17 92.8 262 63.0
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 4.8e-17 92.4 256 62.9
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 4.8e-17 92.4 130 84.6
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 6.3e-17 92.0 141 81.6
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.7e-15 86.7 221 49.3
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.7e-15 86.7 51 78.4
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.3e-14 84.3 71 71.8
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 3.8e-14 82.8 253 55.3
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 6.5e-14 82.0 246 61.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-13 81.3 115 81.7
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-13 81.3 115 81.7
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.1e-13 81.3 115 81.7
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.1e-13 81.3 115 80.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.1e-13 81.3 48 79.2
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.5e-13 80.9 235 64.3
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 5.5e-13 79.0 51 72.5
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 7.2e-13 78.6 51 70.6
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 7.2e-13 78.6 57 87.7
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 9.5e-13 78.2 117 80.3
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.2e-12 77.8 50 74.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-12 77.4 65 64.6
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-12 77.4 252 65.9
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.1e-12 77.0 217 42.4
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.7e-12 75.9 207 66.2
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 8.0e-12 75.1 52 65.4
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 8.0e-12 75.1 52 67.3
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.0e-11 74.7 49 73.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.0e-11 74.7 51 66.7
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.0e-11 74.7 49 73.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-11 74.3 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.4e-11 74.3 52 65.4
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.8e-11 73.9 56 62.5
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.3e-11 73.6 51 64.7
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 5.2e-11 72.4 220 66.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 6.8e-11 72.0 56 60.7
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 8.8e-11 71.6 52 63.5
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.2e-10 71.2 47 70.2
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.5e-10 70.9 50 64.0
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.5e-10 70.9 50 64.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.5e-10 70.9 66 54.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.0e-10 70.5 51 64.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.6e-10 70.1 45 71.1
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.6e-10 70.1 51 64.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.4e-10 69.7 51 62.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 3.4e-10 69.7 47 68.1
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 5.7e-10 68.9 233 61.4
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.5e-10 68.6 52 63.5
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 9.8e-10 68.2 52 63.5
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.3e-09 67.8 51 60.8
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.7e-09 67.4 332 51.5
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.8e-09 66.6 51 60.8
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 2.8e-09 66.6 257 59.5
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 3.7e-09 66.2 68 70.6
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 8.3e-09 65.1 225 64.0
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.8e-08 63.9 52 57.7
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.8e-08 63.9 49 61.2
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 2.4e-08 63.5 49 63.3
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.1e-08 63.2 44 61.4
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.1e-08 62.8 52 57.7
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.1e-08 62.8 52 59.6
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 9.2e-08 61.6 52 57.7
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 9.2e-08 61.6 51 76.5
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.6e-07 60.8 59 52.5
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.6e-07 60.8 47 53.2
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.6e-07 60.8 52 55.8
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.0e-07 60.5 43 62.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 2.0e-07 60.5 52 55.8
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.5e-07 59.7 90 90.0
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.5e-07 59.7 49 57.1
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.5e-07 59.7 52 55.8
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 4.5e-07 59.3 52 53.8
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 5.9e-07 58.9 45 60.0
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 7.8e-07 58.5 52 55.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 7.8e-07 58.5 52 55.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 7.8e-07 58.5 52 53.8
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-06 57.4 43 58.1
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 87 90.8
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 2.3e-06 57.0 44 59.1
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.9e-06 56.6 51 49.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.9e-06 56.6 44 56.8
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 3.8e-06 56.2 207 65.2
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.8e-06 56.2 36 69.4
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 8.6e-06 55.1 43 62.8
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.6e-06 55.1 44 56.8
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 8.6e-06 55.1 43 53.5


User provided reference genes

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