Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 4.0e-125 451.4 230 100.0
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 5.3e-77 291.6 246 65.9
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 2.2e-75 286.2 247 64.8
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 6.3e-62 241.5 242 58.3
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 1.7e-59 233.4 242 56.6
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 8.6e-59 231.1 242 56.2
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 1.8e-56 223.4 244 55.3
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 1.8e-48 196.8 242 48.8
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 1.8e-48 196.8 202 57.4
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 7.0e-45 184.9 243 46.9
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 9.2e-45 184.5 245 46.9
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 3.0e-43 179.5 245 43.7
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 1.1e-42 177.6 245 42.9
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 1.2e-41 174.1 244 41.4
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 8.9e-40 167.9 240 42.5
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 7.5e-39 164.9 244 41.4
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 4.9e-38 162.2 248 39.5
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 1.1e-37 161.0 243 41.2
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 2.4e-37 159.8 227 42.3
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 2.4e-37 159.8 238 42.9
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 3.2e-37 159.5 251 41.0
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 3.2e-37 159.5 225 44.0
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 2.7e-36 156.4 239 40.6
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 1.3e-35 154.1 220 42.3
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 3.0e-35 152.9 253 40.3
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 3.9e-35 152.5 221 44.3
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 1.6e-33 147.1 231 41.1
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 4.7e-33 145.6 244 39.3
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 6.2e-33 145.2 240 40.8
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 2.4e-32 143.3 223 41.7
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 5.2e-32 142.1 241 39.0
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 6.8e-32 141.7 243 38.7
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 3.4e-31 139.4 373 31.4
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 1.3e-30 137.5 271 36.5
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 1.7e-30 137.1 228 40.8
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 3.8e-30 136.0 240 37.9
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 8.4e-30 134.8 245 37.1
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 8.4e-30 134.8 242 38.8
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 1.4e-29 134.0 239 36.4
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 9.2e-29 131.3 235 36.6
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 4.6e-28 129.0 214 37.4
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 7.8e-28 128.3 245 38.4
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 3.3e-26 122.9 235 37.9
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 7.3e-26 121.7 329 30.1
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 3.6e-25 119.4 329 28.9
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 3.6e-25 119.4 226 36.3
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 1.4e-24 117.5 236 35.2
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 9.0e-24 114.8 126 54.0
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 1.3e-22 110.9 253 35.2
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 6.4e-22 108.6 242 33.9
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 6.4e-22 108.6 225 35.1
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 1.1e-21 107.8 225 34.7
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.4e-21 107.5 226 35.8
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 5.4e-21 105.5 223 34.5
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 9.3e-21 104.8 212 36.8
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 9.3e-21 104.8 265 32.8
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 9.3e-21 104.8 236 34.3
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 1.2e-20 104.4 259 32.8
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 2.1e-20 103.6 223 34.1
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 4.6e-20 102.4 250 32.0
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 6.0e-20 102.1 199 34.2
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 7.8e-20 101.7 199 36.2
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 1.3e-19 100.9 236 33.5
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 3.9e-19 99.4 206 35.9
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 8.7e-19 98.2 231 33.3
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 1.5e-18 97.4 256 34.0
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 1.9e-18 97.1 285 29.8
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 2.5e-18 96.7 267 30.0
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 3.3e-18 96.3 236 33.5
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 9.6e-18 94.7 223 35.0
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.6e-17 94.0 224 35.7
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 6.9e-16 88.6 253 27.3
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 6.9e-16 88.6 206 34.0
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 1.5e-15 87.4 250 30.0
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 4.5e-15 85.9 280 30.0
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 4.5e-15 85.9 231 31.2
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 5.8e-15 85.5 208 30.8
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 4.2e-13 79.3 210 32.9
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 3.5e-12 76.3 233 30.0
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 4.6e-12 75.9 247 30.4
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 4.6e-12 75.9 240 32.9
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 1.0e-11 74.7 211 31.8
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 2.3e-11 73.6 266 28.2
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 3.3e-10 69.7 261 29.9
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 4.3e-10 69.3 223 30.5
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 9.6e-10 68.2 78 42.3
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 4.8e-09 65.9 252 29.0
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 6.2e-09 65.5 267 27.7
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 1.1e-08 64.7 119 35.3
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 2.4e-08 63.5 270 27.0
PSO170G1560 Papaver somniferum HOM05D000120 ORTHO05D009410 3.1e-08 63.2 177 29.4
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 4.0e-08 62.8 270 28.5
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 2.6e-07 60.1 253 27.3
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 2.6e-07 60.1 253 27.3
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 2.6e-07 60.1 253 27.3
CDE02G1861 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 4.5e-07 59.3 85 43.5
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 5.8e-07 58.9 253 26.1
BcaC01g00269 Brassica carinata HOM05D011065 ORTHO05D009410 1.0e-06 58.2 247 27.9
C03p77450 Brassica napus HOM05D011065 ORTHO05D009410 1.0e-06 58.2 247 27.9
BolC3t20000H Brassica oleracea HOM05D011065 ORTHO05D009410 1.0e-06 58.2 247 27.9
A08p23900 Brassica napus HOM05D011065 ORTHO05D009410 1.7e-06 57.4 249 25.7
CDE04G2781 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 4.9e-06 55.8 127 37.8
CARHR247790 Cardamine hirsuta HOM05D011065 ORTHO05D009410 6.4e-06 55.5 139 34.5


User provided reference genes

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