Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.3e-63 246.1 118 100.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.0e-60 236.5 118 93.2
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.9e-58 227.6 118 91.5
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.4e-57 226.1 116 92.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-57 226.1 116 92.2
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.4e-57 225.3 116 91.4
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.2e-57 223.4 116 91.4
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 9.2e-57 223.4 116 90.5
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 4.6e-56 221.1 116 88.8
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.6e-53 212.6 118 86.4
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 86.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 86.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 4.7e-53 211.1 116 83.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 4.7e-53 211.1 114 86.8
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.8e-52 209.1 118 83.1
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.3e-52 208.8 117 84.6
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.3e-52 208.8 118 83.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 4.0e-52 208.0 118 81.4
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 5.2e-52 207.6 118 83.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 8.9e-52 206.8 119 83.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 117 82.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.0e-51 205.7 118 80.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.0e-51 205.7 116 82.8
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-51 205.3 118 80.5
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.6e-51 205.3 117 80.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 3.4e-51 204.9 116 80.2
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 3.4e-51 204.9 118 83.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.4e-51 204.9 118 79.7
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.4e-51 204.9 116 81.0
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.4e-51 204.9 118 80.5
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.8e-51 204.1 118 79.7
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 5.8e-51 204.1 118 81.4
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.5e-51 203.8 117 79.5
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 7.5e-51 203.8 117 80.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.5e-51 203.8 118 79.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.9
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 9.8e-51 203.4 117 80.3
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.9
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 9.8e-51 203.4 113 82.3
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 118 79.7
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.7e-50 202.6 118 79.7
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.7e-50 202.6 118 79.7
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.7e-50 202.6 118 79.7
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 2.9e-50 201.8 115 80.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 3.7e-50 201.4 117 77.8
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 4.9e-50 201.1 114 81.6
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 4.9e-50 201.1 114 80.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.1e-49 199.9 118 78.0
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.4e-49 199.5 113 79.6
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.4e-49 199.5 114 82.5
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.4e-49 199.5 114 80.7
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-49 199.1 116 78.4
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.9e-49 199.1 115 80.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.4e-49 198.7 116 78.4
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 3.2e-49 198.4 110 81.8
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.1e-49 198.0 115 80.9
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 80.2
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 80.2
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 80.2
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 5.4e-49 197.6 116 80.2
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 7.0e-49 197.2 116 80.2
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 7.0e-49 197.2 117 77.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 9.2e-49 196.8 114 79.8
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 9.2e-49 196.8 116 79.3
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.2e-49 196.8 115 79.1
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.2e-48 196.4 116 80.2
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.2e-48 196.4 116 80.2
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.6e-48 196.1 116 79.3
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.6e-48 196.1 115 80.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.6e-48 196.1 116 77.6
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 81.4
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.0e-48 195.7 116 79.3
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 116 79.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.0e-48 195.7 116 76.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.7e-48 195.3 116 79.3
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.7e-48 195.3 116 79.3
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 2.7e-48 195.3 137 69.3
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 3.5e-48 194.9 116 79.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.6e-48 194.5 120 76.7
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 4.6e-48 194.5 116 78.4
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 110 80.9
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-47 193.0 116 77.6
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-47 193.0 116 77.6
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-47 193.0 116 77.6
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.3e-47 193.0 117 76.1
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.3e-47 193.0 110 80.0
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.7e-47 192.6 116 76.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 5.0e-47 191.0 113 75.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 5.0e-47 191.0 116 76.7
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.6e-47 190.3 113 77.9
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 8.6e-47 190.3 116 76.7
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-46 189.9 115 78.3
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-46 189.5 116 77.6
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.5e-46 189.5 117 76.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.9e-46 189.1 116 78.4
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.9e-46 189.1 114 77.2
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 115 75.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 115 75.7
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 5.6e-46 187.6 117 76.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.8e-45 185.3 116 74.1
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 3.6e-45 184.9 182 56.6
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.2e-45 184.1 104 82.7
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.8e-44 182.6 115 70.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.8e-44 180.6 111 73.0
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.5e-43 179.5 98 83.7
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 4.4e-43 177.9 151 60.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 9.8e-43 176.8 118 70.3
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.4e-41 172.9 98 80.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-41 172.9 105 75.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.2e-41 171.8 115 66.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 3.2e-41 171.8 105 76.2
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 7.1e-41 170.6 107 72.0
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.2e-41 170.2 115 67.0
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.2e-41 170.2 115 67.0
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.0e-39 166.8 104 73.1
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.3e-39 165.6 128 62.5
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.3e-39 165.6 103 74.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.9e-38 162.5 102 71.6
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-38 161.8 117 68.4
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.3e-38 161.8 101 71.3
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 3.4e-35 151.8 91 78.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 5.4e-33 144.4 112 58.9
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.6e-32 142.9 117 61.5
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 7.8e-32 140.6 115 54.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 7.8e-32 140.6 85 75.3
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 3.3e-30 135.2 112 56.2
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 7.3e-30 134.0 116 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 6.4e-26 120.9 111 50.5
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-25 119.0 114 50.9
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.4e-25 119.0 60 85.0
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.3e-23 112.5 59 81.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.3e-22 108.6 63 73.0
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.6e-21 106.3 103 50.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.8e-21 105.5 85 63.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 3.6e-21 105.1 58 75.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.4e-20 103.2 105 48.6
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.4e-19 98.6 60 73.3
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.2e-18 95.9 113 46.0
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 8.4e-18 94.0 52 86.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.4e-18 94.0 96 45.8
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.4e-17 93.2 56 80.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 3.2e-17 92.0 83 60.2
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 5.4e-17 91.3 58 81.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 7.1e-17 90.9 150 39.3
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.4e-12 75.9 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 3.8e-10 68.6 46 65.2
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.1e-09 67.0 86 37.2
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 4.6e-08 61.6 82 47.6


User provided reference genes

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