Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 4.4e-228 794.3 402 100.0
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 1.2e-185 653.3 354 89.3
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 6.1e-185 651.0 350 91.1
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.4e-184 649.8 350 89.7
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 2.2e-182 642.5 350 91.1
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.8e-176 622.9 352 87.2
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.5e-172 608.2 349 85.1
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 8.5e-171 604.0 349 85.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 4.1e-165 585.1 349 81.1
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 2.0e-164 582.8 352 81.8
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.0e-163 580.5 347 81.8
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 3.8e-163 578.6 349 81.1
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.5e-162 576.6 349 79.4
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 9.4e-162 573.9 355 80.0
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 6.1e-161 571.2 350 79.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.4e-160 570.1 350 79.1
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.8e-160 569.7 345 80.9
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.3e-160 569.3 342 82.5
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.5e-159 566.6 342 82.2
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.4e-159 565.5 344 81.7
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 4.4e-159 565.1 347 79.5
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 9.8e-159 563.9 383 73.9
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.3e-158 563.5 395 74.2
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.7e-158 563.1 351 78.3
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.8e-158 562.4 356 78.1
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 4.8e-158 561.6 349 77.4
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 6.3e-158 561.2 349 78.2
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 8.3e-158 560.8 353 79.3
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 5.4e-157 558.1 354 78.2
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 9.1e-157 557.4 349 78.5
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 9.1e-157 557.4 348 78.2
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 9.1e-157 557.4 351 78.9
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 3.5e-156 555.4 302 89.4
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 7.7e-156 554.3 351 77.8
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.9e-155 552.4 350 78.3
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 6.5e-155 551.2 386 72.3
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 6.5e-155 551.2 306 87.6
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-154 550.4 355 76.9
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.5e-154 550.1 355 76.9
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.0e-152 543.9 359 74.9
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.8e-152 543.1 346 78.6
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.3e-152 542.7 303 86.5
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 5.2e-152 541.6 349 77.1
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.5e-151 540.0 303 85.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 5.7e-151 538.1 323 80.2
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 5.7e-151 538.1 311 83.3
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.3e-150 537.0 346 75.7
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.9e-150 535.0 352 75.0
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 4.9e-150 535.0 337 78.3
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.1e-149 533.9 346 76.0
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.8e-149 533.1 302 85.8
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.4e-149 532.7 349 73.4
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 4.1e-149 531.9 358 74.9
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 9.2e-149 530.8 302 84.8
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 9.2e-149 530.8 352 74.4
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 9.2e-149 530.8 352 74.1
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.2e-148 530.4 303 85.5
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.2e-148 530.4 320 79.7
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.0e-148 529.6 355 75.5
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.7e-148 529.3 359 73.5
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 7.7e-148 527.7 349 73.9
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-147 526.9 348 75.6
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 1.3e-147 526.9 326 80.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 1.3e-147 526.9 312 81.4
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.7e-147 526.6 351 75.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.7e-147 526.6 350 74.3
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.7e-147 526.6 330 77.0
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 6.6e-147 524.6 393 68.7
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 3.3e-146 522.3 352 74.4
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 3.3e-146 522.3 346 74.9
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.3e-146 522.3 313 80.2
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 5.6e-146 521.5 346 73.4
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 9.5e-146 520.8 351 74.4
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.2e-145 520.4 320 79.4
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.2e-143 513.8 384 68.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.7e-143 511.5 324 77.8
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.7e-142 510.0 350 73.4
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.1e-141 507.3 324 79.6
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 2.7e-132 476.1 301 75.4
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 5.6e-130 468.4 362 67.4
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 9.5e-130 467.6 313 72.2
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 2.1e-129 466.5 280 78.9
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 5.2e-128 461.8 349 68.5
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 5.2e-128 461.8 299 77.3
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.7e-123 446.8 345 64.9
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.9e-122 443.4 320 70.3
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.2e-120 435.3 314 65.0
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.2e-120 435.3 314 65.0
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.2e-119 434.1 309 66.7
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 4.6e-116 422.2 304 66.4
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 1.7e-115 420.2 285 72.3
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.4e-112 410.6 362 60.8
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 9.9e-111 404.4 252 79.8
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.4e-109 399.8 269 74.7
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.4e-101 374.0 282 65.6
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.1e-96 356.3 302 55.3
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.0e-91 339.7 242 73.1
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.1e-90 337.8 306 52.9
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 5.6e-90 335.5 226 75.2
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-87 327.4 378 50.8
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 5.8e-87 325.5 352 51.7
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.0e-86 324.7 184 85.3
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 4.8e-81 305.8 312 49.4
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.9e-77 293.9 241 58.9
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.8e-73 280.0 205 69.8
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.8e-73 279.3 246 63.4
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 9.7e-58 228.4 126 81.7
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 9.7e-58 228.4 126 81.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.9e-53 214.2 182 65.4
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.5e-53 212.6 122 77.0
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.6e-52 211.1 122 76.2
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 3.0e-51 206.8 137 76.6
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 6.3e-41 172.6 105 73.3
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.3e-38 164.9 304 31.6
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.5e-34 151.4 297 34.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-33 148.3 144 57.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 3.7e-33 146.7 138 57.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 5.4e-32 142.9 102 68.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 3.3e-29 133.7 181 44.2
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 4.3e-29 133.3 79 77.2
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 2.1e-28 131.0 117 59.8
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 7.5e-26 122.5 114 58.8
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 2.2e-25 120.9 102 61.8
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 3.0e-22 110.5 71 66.2
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 5.0e-22 109.8 114 53.5
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.1e-21 108.6 181 40.9
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 2.3e-19 100.9 127 44.9
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.6e-12 78.2 64 62.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 8.1e-12 75.9 46 78.3
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 1.9e-08 64.7 327 23.9
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.1e-08 63.5 58 56.9
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 1.2e-07 62.0 323 24.5
Migut.M01821 Erythranthe guttata HOM05D000089 ORTHO05D000726 3.0e-06 57.4 110 33.6
Lsat_1_v5_gn_2_77261 Lactuca sativa HOM05D000089 ORTHO05D000726 6.6e-06 56.2 316 22.8


User provided reference genes

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