Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 3.0e-265 917.9 456 100.0
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 3.5e-245 851.3 456 92.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 5.7e-240 833.9 456 90.1
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 2.2e-239 832.0 457 89.5
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.4e-233 812.8 456 87.9
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.4e-233 812.8 456 87.9
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.8e-233 812.4 456 87.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.5e-232 807.0 456 87.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 3.7e-223 778.1 456 84.0
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 9.2e-222 773.5 456 83.3
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 2.7e-221 771.9 456 84.2
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 3.0e-220 768.5 447 85.2
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.6e-220 767.3 456 82.9
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.6e-220 766.9 456 82.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.6e-220 766.9 456 82.9
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.9e-219 765.8 456 82.7
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.3e-219 763.8 457 83.4
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.1e-218 762.3 456 83.8
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.8e-218 761.9 457 82.9
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.3e-217 758.8 457 83.2
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.0e-217 758.1 457 82.9
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 3.7e-215 751.5 457 83.2
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 6.4e-215 750.7 457 82.3
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.1e-214 750.0 457 81.8
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.2e-213 746.5 457 80.5
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.6e-213 746.1 445 82.9
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.7e-213 745.3 440 83.2
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.5e-213 745.0 444 82.0
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.5e-213 745.0 456 82.2
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.7e-212 742.7 453 80.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.0e-212 741.9 445 82.2
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.5e-211 738.8 442 81.9
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 4.3e-211 738.0 442 82.4
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 4.3e-211 738.0 442 81.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-210 736.5 442 81.9
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.2e-210 736.5 442 81.9
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.8e-210 735.3 442 81.7
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 4.7e-210 734.6 457 79.2
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.8e-209 732.6 454 79.5
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 6.8e-209 730.7 443 82.2
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 8.9e-209 730.3 430 83.0
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 8.9e-209 730.3 447 81.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 8.9e-209 730.3 445 81.6
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-208 729.9 456 78.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 7.6e-208 727.2 456 79.2
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.9e-208 726.9 456 78.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.9e-207 725.3 456 78.7
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.9e-207 725.3 460 78.5
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 3.8e-207 724.9 456 80.7
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 6.4e-207 724.2 447 80.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.1e-206 723.4 445 80.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.9e-206 722.6 442 79.9
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.9e-206 722.6 442 79.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 5.4e-206 721.1 458 78.6
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 9.2e-206 720.3 456 77.6
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.6e-205 719.5 447 80.8
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.1e-205 719.2 444 79.3
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.7e-205 718.8 456 77.9
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.3e-204 716.5 456 78.5
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 8.6e-204 713.8 458 77.1
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.5e-203 713.0 456 76.8
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.9e-203 712.6 444 79.3
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.5e-203 712.2 458 77.1
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.3e-203 711.4 424 82.5
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 7.3e-203 710.7 447 79.4
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.6e-203 710.3 458 77.9
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.2e-202 709.9 470 77.9
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.2e-202 709.9 445 79.3
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.8e-202 708.8 462 77.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 4.7e-202 708.0 446 77.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 6.2e-202 707.6 470 77.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.1e-201 706.8 440 78.6
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.8e-201 706.1 450 79.6
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 3.1e-201 705.3 457 79.6
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.0e-200 702.6 448 77.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.0e-200 702.6 453 77.7
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.6e-200 700.7 457 75.7
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.7e-199 699.5 457 76.1
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 3.8e-199 698.4 470 74.7
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 4.9e-199 698.0 449 76.8
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 6.4e-199 697.6 447 77.4
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.5e-197 691.8 447 76.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.0e-196 690.3 447 76.7
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.0e-196 690.3 473 75.9
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-196 689.9 440 78.9
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 3.9e-196 688.3 462 76.4
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 3.9e-196 688.3 479 73.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 5.1e-196 688.0 470 75.7
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.5e-195 685.6 440 78.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.3e-195 685.3 457 76.1
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 1.3e-194 683.3 470 73.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.6e-194 682.9 471 75.6
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.9e-193 677.6 449 74.8
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.9e-193 677.6 470 74.5
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.9e-192 673.7 445 75.1
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.7e-191 672.9 449 74.4
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 3.2e-190 668.7 449 75.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 6.0e-189 664.5 457 73.3
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.6e-187 657.1 454 72.5
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.3e-186 656.8 457 72.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 3.7e-186 655.2 564 62.6
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 6.2e-186 654.4 457 72.4
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.6e-184 647.5 444 73.4
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 9.9e-184 647.1 437 73.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 2.2e-183 646.0 425 73.9
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.9e-182 642.9 450 70.7
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.5e-179 633.3 443 71.8
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.8e-178 629.0 443 71.6
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 4.8e-178 628.2 485 67.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.8e-177 626.3 456 69.5
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.0e-177 625.2 389 78.4
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.5e-176 623.2 443 70.9
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.4e-176 622.1 452 69.9
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 7.6e-176 620.9 421 72.9
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 5.7e-171 604.7 472 65.9
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 2.1e-170 602.8 450 67.1
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.5e-167 591.3 429 69.5
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 6.5e-167 591.3 429 68.3
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.1e-161 572.4 372 76.6
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 9.1e-161 570.9 444 67.6
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 7.7e-160 567.8 400 68.8
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.2e-154 549.7 398 71.4
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.6e-152 542.7 363 74.1
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.0e-151 540.8 425 62.4
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.3e-146 521.5 439 62.0
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.7e-143 513.5 341 72.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.5e-143 511.1 351 72.1
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 6.7e-140 501.5 406 63.5
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 2.8e-138 496.1 471 56.3
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.3e-137 491.9 427 60.0
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.6e-136 490.3 454 56.4
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.2e-134 482.3 457 58.0
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-133 480.3 323 73.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.7e-111 407.1 288 69.4
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-111 406.8 320 67.2
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.3e-95 353.6 260 70.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.8e-93 346.7 208 84.6
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 8.9e-92 341.7 257 66.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-91 341.3 211 81.0
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 6.4e-82 308.9 438 44.1
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.9e-76 288.9 197 73.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 8.1e-69 265.4 180 75.6
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 2.5e-54 217.2 153 73.9
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.5e-51 208.0 138 76.1
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.7e-40 170.6 230 45.7
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 2.4e-36 157.5 147 55.8
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 3.8e-34 150.2 146 56.8
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.2e-22 112.1 60 93.3
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.4e-12 77.8 56 64.3


User provided reference genes

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