Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.6e-46 189.1 97 100.0
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 5.4e-39 164.1 97 87.6
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 2.7e-38 161.8 98 86.7
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 6.0e-38 160.6 94 89.4
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 7.8e-38 160.2 97 86.6
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.0e-37 159.8 92 88.0
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 1.0e-37 159.8 97 86.6
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 1.3e-37 159.5 92 90.2
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 8.7e-37 156.8 97 82.5
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.1e-36 156.4 93 87.1
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 1.5e-36 156.0 90 86.7
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 3.3e-36 154.8 92 87.0
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 3.3e-36 154.8 86 88.4
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 3.3e-36 154.8 92 88.0
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.3e-36 154.8 92 88.0
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.3e-36 154.8 92 88.0
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 3.3e-36 154.8 92 88.0
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 3.3e-36 154.8 87 90.8
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 3.3e-36 154.8 97 84.5
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 5.6e-36 154.1 86 89.5
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 5.6e-36 154.1 86 89.5
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 5.6e-36 154.1 86 89.5
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 5.6e-36 154.1 97 83.5
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 7.3e-36 153.7 94 85.1
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 7.3e-36 153.7 86 89.5
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 9.6e-36 153.3 90 88.9
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.3e-35 152.9 92 87.0
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.6e-35 152.5 97 83.5
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 2.8e-35 151.8 95 81.1
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 2.8e-35 151.8 95 81.1
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 2.8e-35 151.8 92 84.8
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 3.6e-35 151.4 98 80.6
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 4.8e-35 151.0 86 88.4
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 8.1e-35 150.2 80 91.2
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 8.1e-35 150.2 80 92.5
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 1.1e-34 149.8 91 81.3
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 1.8e-34 149.1 91 84.6
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 1.8e-34 149.1 97 81.4
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 2.4e-34 148.7 96 80.2
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 2.4e-34 148.7 86 86.0
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 2.4e-34 148.7 81 90.1
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 80 91.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 4.0e-34 147.9 99 78.8
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 5.3e-34 147.5 80 91.2
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 6.9e-34 147.1 87 83.9
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 6.9e-34 147.1 81 88.9
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 6.9e-34 147.1 80 91.2
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 6.9e-34 147.1 85 85.9
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 6.9e-34 147.1 80 88.8
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.2e-33 146.4 80 91.2
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.2e-33 146.4 86 87.2
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.5e-33 146.0 86 86.0
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 2.0e-33 145.6 86 84.9
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 2.6e-33 145.2 87 85.1
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 3.4e-33 144.8 97 76.3
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 3.4e-33 144.8 91 81.3
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 3.4e-33 144.8 86 84.9
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 4.5e-33 144.4 89 83.1
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 5.8e-33 144.1 88 86.4
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 5.8e-33 144.1 86 87.2
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 7.6e-33 143.7 123 67.5
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 9.9e-33 143.3 91 75.8
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 9.9e-33 143.3 86 84.9
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 9.9e-33 143.3 86 86.0
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.3e-32 142.9 97 75.3
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 2.2e-32 142.1 85 83.5
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 2.2e-32 142.1 88 80.7
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 2.9e-32 141.7 85 83.5
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 2.9e-32 141.7 85 82.4
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 3.8e-32 141.4 95 72.6
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 4.9e-32 141.0 80 85.0
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 6.4e-32 140.6 81 84.0
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 6.4e-32 140.6 79 86.1
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 8.4e-32 140.2 86 82.6
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 8.4e-32 140.2 80 86.2
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 8.4e-32 140.2 94 77.7
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.1e-31 139.8 97 78.4
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 1.1e-31 139.8 86 81.4
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.9e-31 139.0 78 87.2
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 1.9e-31 139.0 73 93.2
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 2.4e-31 138.7 79 86.1
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 3.2e-31 138.3 81 82.7
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 3.2e-31 138.3 85 81.2
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 4.2e-31 137.9 81 82.7
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 5.4e-31 137.5 108 70.4
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 7.1e-31 137.1 86 80.2
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 7.1e-31 137.1 83 81.9
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 9.3e-31 136.7 78 87.2
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 1.2e-30 136.3 92 77.2
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.6e-30 136.0 89 76.4
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 1.6e-30 136.0 92 72.8
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 2.7e-30 135.2 81 80.2
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 2.7e-30 135.2 81 80.2
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 3.5e-30 134.8 80 80.0
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 3.5e-30 134.8 86 81.4
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 4.6e-30 134.4 81 79.0
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 4.6e-30 134.4 81 79.0
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 4.6e-30 134.4 81 79.0
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 4.6e-30 134.4 79 81.0
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 4.6e-30 134.4 83 81.9
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 6.0e-30 134.0 81 79.0
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 6.0e-30 134.0 81 79.0
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 6.0e-30 134.0 80 80.0
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 6.0e-30 134.0 80 80.0
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 1.0e-29 133.3 99 70.7
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 3.0e-29 131.7 78 83.3
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 3.9e-29 131.3 80 78.8
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.9e-29 131.3 93 75.3
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 5.6e-28 127.5 78 80.8
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 1.4e-26 122.9 78 76.9
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.4e-25 118.2 150 50.0
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 5.8e-25 117.5 62 93.5
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.2e-24 115.5 68 85.3
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.8e-24 114.8 132 51.5
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 1.1e-23 113.2 78 70.5
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.9e-23 112.5 95 63.2
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 2.3e-21 105.5 66 81.8
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.5e-17 91.3 52 90.4
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.5e-17 91.3 52 90.4
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.5e-17 91.3 52 90.4
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 2.1e-14 82.4 81 54.3
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 3.5e-14 81.6 59 72.9
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 4.5e-09 64.7 40 80.0


User provided reference genes

Program Settings