Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 9.9e-104 380.2 199 100.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.6e-82 309.7 199 78.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 6.9e-81 304.3 200 79.0
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.2e-77 293.5 186 80.1
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 8.2e-74 280.8 180 79.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.1e-73 280.4 193 74.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.8e-73 279.6 170 83.5
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.1e-73 278.9 193 74.1
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.4e-72 275.4 193 72.5
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-72 274.6 193 72.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.2e-71 272.7 188 73.4
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.2e-71 272.7 197 71.6
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.8e-71 271.9 179 77.7
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.9e-70 269.6 167 80.2
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.9e-70 269.6 187 72.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.2e-70 268.5 177 76.8
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.5e-70 268.1 186 73.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 5.5e-70 268.1 197 69.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.2e-70 267.7 195 71.8
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.2e-70 267.7 179 73.7
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 9.3e-70 267.3 197 69.0
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.6e-69 266.5 197 70.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 3.6e-69 265.4 193 69.9
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 3.6e-69 265.4 193 71.0
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.6e-69 265.0 177 74.6
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 7.9e-69 264.2 199 67.8
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.9e-69 264.2 194 68.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.9e-69 264.2 202 69.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.0e-68 263.8 178 73.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-68 262.3 192 67.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.0e-68 262.3 183 73.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 5.1e-68 261.5 192 70.3
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.7e-68 260.8 167 76.0
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.1e-67 260.4 177 74.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-67 260.4 197 68.5
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.9e-67 259.6 176 72.2
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.9e-67 259.6 177 72.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.3e-67 258.5 192 66.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.4e-67 257.7 180 75.6
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.6e-66 256.5 186 68.8
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.6e-66 256.5 195 68.7
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.6e-66 256.5 195 68.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-66 256.1 203 68.0
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.2e-66 256.1 184 70.1
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.8e-66 255.8 174 74.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.7e-66 255.4 196 65.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 8.2e-66 254.2 190 67.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.1e-65 253.8 189 68.3
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.1e-65 253.8 174 72.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.8e-65 253.1 172 74.4
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.8e-65 253.1 176 72.2
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.4e-65 252.7 177 71.8
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 3.1e-65 252.3 180 71.7
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 4.1e-65 251.9 193 69.9
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 4.1e-65 251.9 194 67.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.1e-65 251.9 172 74.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.3e-65 251.5 160 75.6
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 6.9e-65 251.1 178 70.2
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 9.1e-65 250.8 189 66.1
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 9.1e-65 250.8 187 64.2
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.0e-64 249.6 186 66.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.6e-64 249.2 150 80.7
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 4.5e-64 248.4 193 68.4
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 4.5e-64 248.4 193 68.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.9e-64 248.1 191 64.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 5.9e-64 248.1 183 70.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 5.9e-64 248.1 183 70.5
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 7.7e-64 247.7 195 66.7
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 7.7e-64 247.7 195 66.2
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.0e-63 247.3 189 68.3
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.0e-63 247.3 189 68.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.3e-63 246.9 195 66.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.9e-63 245.7 193 66.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.9e-63 245.7 219 63.5
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.8e-63 245.4 176 69.9
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 5.0e-63 245.0 179 68.2
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 5.0e-63 245.0 181 66.3
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 6.5e-63 244.6 171 71.3
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.5e-63 244.6 194 66.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 8.5e-63 244.2 181 66.3
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 8.5e-63 244.2 197 64.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.1e-62 243.8 213 62.4
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.1e-62 243.8 186 65.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 181 64.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.4e-62 243.4 177 69.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.5e-62 242.7 180 64.4
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 4.2e-62 241.9 197 60.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 9.4e-62 240.7 202 60.4
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 9.4e-62 240.7 180 64.4
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.1e-61 239.6 204 61.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.1e-61 239.6 178 68.5
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.7e-61 239.2 184 66.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.6e-61 238.8 196 63.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.6e-61 238.8 180 64.4
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 6.1e-61 238.0 157 75.8
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 7.9e-61 237.7 179 66.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 7.9e-61 237.7 181 68.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.0e-60 237.3 184 66.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.0e-60 237.3 203 62.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.4e-60 236.9 188 65.4
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.8e-60 236.5 192 65.6
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 8.8e-60 234.2 176 67.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 4.4e-59 231.9 194 61.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 9.7e-59 230.7 179 67.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.2e-58 229.6 179 66.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 218 57.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 6.9e-57 224.6 168 67.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 6.9e-57 224.6 168 67.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.2e-56 223.8 166 65.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.0e-56 223.0 166 68.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.6e-56 222.6 188 60.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.6e-56 222.6 216 56.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.6e-56 222.6 178 64.0
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.5e-56 221.9 171 64.3
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.5e-56 221.9 192 59.9
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 4.5e-56 221.9 171 64.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 6.5e-55 218.0 187 66.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-52 210.3 187 60.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 6.7e-52 208.0 202 58.9
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.1e-51 207.2 178 62.4
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.0e-51 206.5 142 71.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 3.1e-49 199.1 167 62.3
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.4e-44 183.7 164 54.3
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.8e-44 183.3 179 54.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.3e-44 183.0 193 51.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.8e-44 181.0 167 55.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.3e-43 179.1 216 50.0
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.3e-42 174.9 157 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.2e-40 170.6 165 53.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 6.1e-37 158.3 102 78.4
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.2e-36 155.2 113 66.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.5e-35 151.4 104 74.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.8e-34 149.4 165 49.1
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.8e-34 149.4 125 60.0
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-33 146.4 97 72.2
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.1e-33 146.0 165 47.9
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.5e-32 142.5 177 46.9
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.3e-31 140.6 105 66.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-30 136.3 120 57.5
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.8e-29 132.9 106 62.3
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 6.1e-29 131.7 93 62.4
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.3e-28 129.8 139 50.4
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 3.1e-25 119.4 101 62.4
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.1e-25 119.0 82 74.4
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 7.8e-24 114.8 99 59.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.8e-21 106.3 138 45.7
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.8e-20 103.6 78 70.5
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.8e-20 101.7 80 63.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 9.2e-17 91.3 135 37.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-14 84.3 63 71.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 7.3e-14 81.6 74 59.5
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.9e-10 69.7 47 74.5
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.1e-09 67.8 41 78.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-09 67.0 96 42.7
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 7.0e-09 65.1 46 67.4
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.0e-07 59.7 45 66.7
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.5e-06 57.4 62 56.5
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.3e-06 56.2 44 68.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 9.5e-06 54.7 62 54.8


User provided reference genes

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