Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-97 359.4 192 100.0
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 4.2e-91 338.2 176 92.6
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.1e-89 331.3 175 91.4
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.1e-89 331.3 175 91.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 9.9e-85 317.0 174 85.6
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 9.9e-85 317.0 175 88.0
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.2e-84 315.8 176 86.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.2e-83 311.6 174 85.6
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 9.3e-83 310.5 174 84.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.2e-82 310.1 174 85.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-82 309.7 174 85.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 6.0e-82 307.8 174 83.9
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 6.0e-82 307.8 175 82.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 7.9e-82 307.4 176 82.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 7.9e-82 307.4 176 85.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.9e-82 307.4 174 82.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.3e-81 306.6 176 82.4
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-81 306.6 173 83.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.3e-81 305.8 174 83.9
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.3e-81 305.8 174 82.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.0e-81 305.4 174 82.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.0e-81 305.4 175 85.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.7e-81 304.3 176 81.2
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.7e-81 304.3 176 81.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 8.7e-81 303.9 174 82.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 8.7e-81 303.9 174 81.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-80 303.1 175 82.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 7.4e-80 300.8 173 82.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.4e-78 295.8 175 80.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.1e-78 295.4 175 80.6
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.1e-78 295.4 175 80.0
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 5.3e-78 294.7 173 81.5
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.2e-77 293.5 175 78.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.2e-77 293.5 175 78.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.2e-77 293.5 175 78.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.2e-77 293.5 175 80.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.5e-77 293.1 175 78.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.5e-77 293.1 175 78.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.5e-77 293.1 173 80.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.5e-77 293.1 173 80.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.0e-77 292.7 175 78.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.6e-77 292.4 175 78.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.6e-77 292.4 174 77.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.6e-77 292.4 173 80.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.4e-77 292.0 173 80.3
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.8e-77 291.2 172 80.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 7.6e-77 290.8 174 79.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.9e-76 288.9 175 76.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.9e-76 288.9 173 79.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-76 288.9 175 76.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.9e-76 288.1 169 81.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.9e-76 288.1 175 78.9
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.1e-75 287.0 175 76.0
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-75 286.6 163 83.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.9e-75 286.2 173 76.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.9e-75 286.2 175 75.4
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-75 286.2 175 77.7
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.9e-75 286.2 171 78.9
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.4e-75 285.8 171 78.4
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-75 285.4 175 77.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-75 284.6 175 77.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.5e-75 284.6 173 76.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.2e-74 283.5 177 77.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-74 283.1 168 82.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.1e-74 282.7 174 78.7
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.5e-74 282.0 173 76.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 7.9e-74 280.8 173 78.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-73 280.0 171 78.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.3e-73 280.0 171 78.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.3e-73 279.3 175 75.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 5.1e-73 278.1 173 75.7
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 8.7e-73 277.3 174 75.9
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.1e-72 276.9 175 74.3
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.5e-72 276.6 175 73.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-72 275.8 175 73.7
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.5e-72 275.8 175 73.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.3e-72 275.0 174 76.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 9.6e-72 273.9 173 73.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.3e-71 273.5 173 72.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.1e-71 272.7 171 77.8
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.2e-71 270.8 175 72.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-70 269.6 156 82.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.4e-70 269.2 170 76.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.4e-70 269.2 169 74.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.1e-70 268.9 173 71.7
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.0e-70 268.5 173 71.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 175 71.4
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.0e-70 267.3 172 71.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.5e-69 265.0 173 71.1
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-68 263.5 171 74.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.2e-68 262.7 162 77.2
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.9e-68 262.3 170 74.1
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.8e-68 261.9 169 72.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.5e-68 261.2 168 74.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 8.4e-68 260.8 170 71.2
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.1e-67 260.4 173 73.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.5e-67 259.2 172 73.8
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 5.5e-67 258.1 165 75.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 5.5e-67 258.1 173 69.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.5e-67 258.1 174 65.5
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.3e-67 257.3 172 71.5
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.5e-66 255.4 168 72.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.6e-66 255.0 176 71.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.0e-65 253.8 170 68.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.8e-65 253.1 173 71.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.9e-65 251.9 163 71.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.1e-65 251.5 169 71.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-64 249.6 165 72.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-64 249.6 165 72.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.3e-64 248.8 164 74.4
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 9.7e-64 247.3 170 69.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-63 246.5 158 74.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.6e-63 246.5 159 73.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.8e-63 245.7 170 71.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 6.3e-63 244.6 168 68.5
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 8.2e-63 244.2 172 68.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-62 243.4 165 70.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.1e-62 242.3 170 70.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.1e-62 241.9 165 69.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-61 240.4 170 65.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-61 240.0 165 69.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.6e-61 239.2 172 65.7
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.0e-60 237.3 160 67.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.3e-60 236.9 164 70.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.2e-60 236.1 173 67.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.9e-60 235.7 171 66.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 3.8e-60 235.3 168 67.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.0e-60 235.0 171 66.1
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.5e-60 234.6 170 65.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.5e-59 232.6 134 79.1
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.5e-59 231.5 136 76.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 6.7e-57 224.6 168 66.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.7e-57 224.6 168 66.7
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 169 66.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-56 222.2 169 66.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 9.7e-56 220.7 175 61.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.4e-54 216.1 160 63.1
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.3e-54 214.9 165 66.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.1e-54 214.2 183 61.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.6e-53 212.6 157 63.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.5e-53 211.8 141 69.5
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 7.7e-53 211.1 159 61.6
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.7e-53 211.1 138 77.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-52 210.7 157 64.3
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.2e-52 209.5 175 57.7
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.2e-51 205.7 163 62.6
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 7.2e-51 204.5 166 64.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-50 203.4 159 64.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.1e-50 203.0 165 58.2
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.6e-50 202.2 135 74.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.9e-50 201.1 170 54.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.8e-49 199.9 171 59.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.4e-48 195.3 145 66.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.8e-46 189.9 164 61.0
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.3e-46 188.3 129 71.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.5e-45 185.3 129 68.2
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.3e-44 183.7 169 55.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-44 183.7 159 58.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-44 183.0 125 71.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-44 182.6 169 56.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.5e-44 181.4 169 56.2
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.0e-41 172.6 142 54.2
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.7e-40 167.5 113 76.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-35 154.1 92 78.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.8e-33 146.7 97 71.1
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-32 143.7 94 68.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 5.7e-32 141.7 91 69.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 7.5e-32 141.4 177 47.5
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.8e-30 136.7 93 73.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-28 131.0 148 42.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.9e-28 129.4 73 83.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-18 97.4 79 58.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.5e-16 88.2 54 77.8
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.5e-13 79.0 106 44.3
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 6.6e-12 75.1 69 53.6
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.3e-11 71.6 36 86.1
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 7.3e-11 71.6 80 47.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.2e-10 70.9 173 31.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.4e-09 67.4 36 80.6
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.9e-09 64.7 177 28.8
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 7.5e-08 61.6 31 87.1
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 8.3e-07 58.2 31 83.9
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 57.8 39 66.7
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.4e-06 56.6 31 80.6


User provided reference genes

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