Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.9e-51 204.9 103 100.0
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 8.6e-35 150.2 74 98.6
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 5.8e-31 137.5 71 93.0
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 1.7e-30 136.0 80 83.8
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 2.2e-30 135.6 74 87.8
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 2.9e-30 135.2 75 86.7
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 3.7e-30 134.8 74 85.1
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 3.7e-30 134.8 79 82.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.1e-29 133.3 79 79.7
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.1e-29 133.3 79 79.7
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.9e-29 132.5 79 77.2
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.9e-29 132.5 74 85.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.4e-29 132.1 79 78.5
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.4e-29 132.1 79 78.5
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.4e-29 132.1 74 85.1
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 4.1e-29 131.3 73 84.9
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.1e-29 131.3 79 77.2
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 4.1e-29 131.3 74 82.4
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 7.1e-29 130.6 74 79.7
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 7.1e-29 130.6 74 83.8
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 9.2e-29 130.2 79 77.2
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 1.2e-28 129.8 73 84.9
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-28 129.8 73 84.9
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 1.2e-28 129.8 74 79.7
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.2e-28 129.8 79 75.9
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 2.1e-28 129.0 79 75.9
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 2.1e-28 129.0 79 77.2
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.7e-28 128.6 79 75.9
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.7e-28 128.6 74 79.7
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.7e-28 128.6 79 74.7
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 3.5e-28 128.3 79 74.7
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 4.6e-28 127.9 79 74.7
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 4.6e-28 127.9 79 77.2
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 4.6e-28 127.9 72 77.8
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 4.6e-28 127.9 78 73.1
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.0e-28 127.5 72 77.8
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 7.8e-28 127.1 79 74.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.0e-27 126.7 79 73.4
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.0e-27 126.7 79 73.4
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.0e-27 126.7 78 71.8
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 1.3e-27 126.3 78 71.8
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.3e-27 126.3 78 71.8
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 1.7e-27 125.9 79 72.2
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 1.7e-27 125.9 79 72.2
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 2.3e-27 125.6 79 74.7
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.3e-27 125.6 73 75.3
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 3.9e-27 124.8 79 70.9
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 5.1e-27 124.4 79 69.6
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 5.1e-27 124.4 79 69.6
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.1e-27 124.4 79 70.9
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 5.1e-27 124.4 79 72.2
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 5.1e-27 124.4 79 69.6
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 75.9
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 72.2
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 73.4
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 74.7
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 69.6
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 68.4
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 6.6e-27 124.0 79 74.7
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.1e-26 123.2 79 73.4
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 1.5e-26 122.9 79 72.2
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 1.9e-26 122.5 79 73.4
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.9e-26 122.5 79 70.9
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.5e-26 122.1 79 74.7
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 2.5e-26 122.1 79 72.2
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 2.5e-26 122.1 79 70.9
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.5e-26 122.1 79 74.7
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 3.3e-26 121.7 79 69.6
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 3.3e-26 121.7 79 72.2
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 4.3e-26 121.3 79 69.6
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 5.6e-26 120.9 79 70.9
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 70.9
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 70.9
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 70.9
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 70.9
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 70.9
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 74.7
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 7.3e-26 120.6 79 67.1
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 7.3e-26 120.6 74 74.3
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 1.2e-25 119.8 79 68.4
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.2e-25 119.8 74 75.7
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.6e-25 119.4 79 69.6
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.6e-25 119.4 79 65.8
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.1e-25 119.0 79 74.7
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 2.1e-25 119.0 78 70.5
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 2.8e-25 118.6 79 69.6
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.8e-25 118.6 79 70.9
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 2.8e-25 118.6 79 72.2
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 4.7e-25 117.9 79 64.6
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 6.2e-25 117.5 79 72.2
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.1e-24 116.7 74 75.7
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.1e-24 116.7 79 70.9
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.4e-24 116.3 79 69.6
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.8e-24 115.9 79 69.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.8e-24 115.9 79 69.6
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.8e-24 115.9 79 70.9
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.4e-24 115.5 73 74.0
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 5.2e-24 114.4 78 67.9
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 6.8e-24 114.0 79 63.3
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 8.9e-24 113.6 79 68.4
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.2e-23 113.2 78 67.9
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 1.5e-23 112.8 79 68.4
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 2.6e-23 112.1 66 77.3
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 9.9e-23 110.2 74 71.6
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 6.4e-22 107.5 74 67.6
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 7.1e-21 104.0 79 60.8
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 6.0e-20 100.9 79 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 2.3e-19 99.0 74 58.1
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 6.6e-19 97.4 74 62.2
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 8.7e-19 97.1 79 54.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 8.1e-17 90.5 79 54.4
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 7.6e-15 84.0 74 51.4
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.9e-13 79.3 63 55.6
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 2.4e-13 79.0 63 54.0
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-13 79.0 63 55.6
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 5.4e-13 77.8 63 50.8
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 9.3e-13 77.0 78 43.6
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-12 76.6 65 49.2
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-12 76.6 63 55.6
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 1.2e-12 76.6 65 53.8
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-12 76.3 63 52.4
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-12 75.9 63 55.6
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-12 75.5 65 52.3
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 3.5e-12 75.1 65 50.8
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 4.6e-12 74.7 63 54.0
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 7.8e-12 73.9 65 49.2
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-11 73.2 63 54.0
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.7e-11 72.8 62 46.8
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.7e-11 72.8 65 46.2
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-10 68.9 63 44.4
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-10 68.9 63 44.4
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 4.3e-10 68.2 66 45.5
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-09 65.9 63 46.0
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.5e-07 59.7 49 51.0
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 4.5e-07 58.2 63 44.4


User provided reference genes

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