Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 7.8e-226 786.9 440 100.0
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 2.0e-157 559.7 384 80.5
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 4.2e-123 445.7 382 66.2
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.6e-122 443.7 392 64.5
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.7e-117 426.4 356 65.2
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 3.5e-117 426.0 384 61.7
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.0e-116 424.5 384 63.0
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 9.5e-115 417.9 380 62.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 3.4e-112 409.5 385 60.5
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 2.8e-111 406.4 383 60.6
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 5.4e-110 402.1 372 61.0
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.7e-109 399.8 385 60.0
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.7e-109 399.8 384 58.3
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.5e-109 399.4 384 58.9
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 4.5e-109 399.1 385 60.3
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 7.8e-109 398.3 383 60.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.7e-108 397.1 384 58.1
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 8.6e-108 394.8 381 59.8
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.3e-107 392.5 384 59.9
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 5.6e-107 392.1 388 59.3
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 9.5e-107 391.3 382 58.6
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 8.0e-106 388.3 383 58.5
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 3.4e-104 382.9 384 60.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 4.4e-104 382.5 382 60.5
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.2e-102 376.3 386 56.2
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 7.0e-102 375.2 371 59.0
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.6e-101 374.0 380 57.9
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.0e-101 373.6 384 57.0
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 7.8e-101 371.7 386 55.4
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.7e-100 370.5 372 57.3
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.6e-98 364.0 380 57.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.8e-98 363.2 382 56.5
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 3.6e-98 362.8 382 56.0
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.3e-97 360.1 385 56.6
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 8.9e-97 358.2 342 59.6
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.0e-96 357.1 385 55.1
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.3e-95 354.4 377 55.7
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 8.3e-95 351.7 382 56.3
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 7.8e-93 345.1 382 54.7
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.2e-90 337.8 413 51.1
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 1.1e-89 334.7 384 52.1
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 4.0e-89 332.8 376 55.1
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 4.0e-89 332.8 384 52.1
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.5e-88 330.9 308 62.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.7e-87 327.4 386 52.1
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.9e-87 326.6 384 51.3
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 6.4e-87 325.5 490 44.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.1e-86 324.7 383 52.0
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.9e-86 323.9 384 52.9
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 2.4e-86 323.6 387 52.2
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.6e-85 320.9 386 50.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 6.0e-85 318.9 356 54.8
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 6.0e-85 318.9 373 52.5
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.9e-84 316.2 348 55.5
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 6.6e-84 315.5 386 50.0
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.3e-83 312.8 413 47.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 3.1e-81 306.6 379 52.5
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 1.2e-80 304.7 380 50.0
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.0e-80 303.9 377 50.7
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 9.9e-80 301.6 356 50.6
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 3.8e-79 299.7 257 65.8
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 6.4e-79 298.9 426 46.2
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 8.4e-79 298.5 401 53.4
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 5.4e-78 295.8 426 46.5
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 4.6e-77 292.7 420 44.8
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.9e-75 287.3 302 60.6
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 9.6e-75 285.0 255 62.0
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.8e-74 283.5 386 51.6
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.8e-74 283.5 382 50.5
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 8.1e-74 282.0 320 53.1
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.5e-72 277.7 390 47.2
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.0e-72 277.3 386 51.6
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 9.9e-72 275.0 266 55.3
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 2.2e-71 273.9 397 47.1
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 2.4e-70 270.4 388 47.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 4.2e-70 269.6 401 43.4
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.2e-69 268.1 375 46.1
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.2e-69 268.1 373 45.3
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 6.0e-69 265.8 376 46.3
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 6.6e-68 262.3 386 50.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.1e-67 261.5 395 49.4
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.6e-67 258.5 283 58.7
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.1e-66 257.3 378 45.8
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 1.1e-65 255.0 407 43.7
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 6.9e-65 252.3 233 61.4
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 9.0e-65 251.9 381 45.7
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 9.0e-65 251.9 386 45.6
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.5e-64 251.1 231 60.6
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 5.8e-64 249.2 393 45.3
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 9.9e-64 248.4 388 43.6
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.2e-63 247.3 291 50.9
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.1e-61 240.7 369 44.7
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 6.0e-61 239.2 384 44.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.3e-60 238.0 387 42.6
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 5.6e-59 232.6 273 51.6
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 1.8e-57 227.6 309 48.5
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 5.3e-57 226.1 382 44.0
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 9.0e-57 225.3 270 48.9
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.2e-56 224.9 270 48.5
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.2e-56 224.9 270 48.5
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.5e-56 224.6 270 48.5
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 3.4e-56 223.4 376 41.8
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.4e-54 218.0 236 56.8
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 3.2e-54 216.9 286 46.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 9.3e-54 215.3 237 54.9
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 9.3e-54 215.3 266 55.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 4.6e-53 213.0 240 53.8
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.6e-50 204.5 257 47.9
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 2.1e-50 204.1 326 43.9
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 3.1e-49 200.3 328 43.3
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.2e-48 198.4 308 42.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.6e-48 197.2 231 50.2
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.5e-46 190.7 212 52.8
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 5.5e-46 189.5 384 38.5
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.9e-44 183.3 363 43.5
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 5.7e-43 179.5 235 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.2e-40 171.8 238 45.8
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.9e-39 167.2 263 41.8
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 4.2e-38 163.3 366 35.0
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.2e-30 136.7 252 42.9
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.2e-29 135.2 300 36.7
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.7e-23 114.8 143 51.0
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 8.5e-23 112.5 85 65.9
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 4.2e-22 110.2 220 44.1
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 5.2e-20 103.2 193 42.5
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 5.2e-20 103.2 149 49.0
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.0e-17 92.8 99 58.6
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.5e-14 84.3 77 66.2
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.6e-13 80.5 144 37.5
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 3.6e-13 80.5 180 31.7
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 4.0e-12 77.0 105 43.8
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.0e-11 74.7 159 36.5
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 8.3e-10 69.3 87 51.7
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.7e-08 64.3 178 30.3
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 3.8e-07 60.5 68 48.5
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 7.2e-06 56.2 50 50.0


User provided reference genes

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