Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 8.1e-113 410.6 235 100.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 7.2e-53 211.5 242 59.5
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 2.5e-45 186.4 236 52.5
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.6e-44 183.7 235 55.7
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.2e-41 173.3 221 51.6
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.2e-41 173.3 169 62.7
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.7e-41 172.6 235 52.8
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 8.2e-41 171.4 235 54.0
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 2.0e-39 166.8 236 50.0
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.5e-39 166.0 235 50.2
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.9e-38 162.9 236 49.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.2e-37 159.1 171 54.4
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-36 157.5 234 45.3
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.6e-36 157.1 232 44.0
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.0e-35 154.5 231 45.0
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-35 153.7 234 44.4
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 4.0e-35 152.5 224 54.9
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.0e-35 152.5 243 47.7
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 5.2e-35 152.1 172 57.0
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.8e-35 151.4 174 54.0
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.8e-35 151.4 173 56.1
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.8e-35 151.4 173 56.1
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.4e-34 149.1 168 53.0
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.3e-33 147.5 171 56.1
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 3.7e-33 146.0 229 43.2
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 8.3e-33 144.8 224 47.8
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-32 144.1 227 43.6
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.8e-32 143.7 231 42.0
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.8e-32 143.7 168 50.6
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.1e-32 142.5 234 42.7
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 9.1e-32 141.4 158 53.2
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 9.1e-32 141.4 153 53.6
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.6e-31 140.6 153 51.0
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.0e-31 140.2 173 49.1
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.5e-31 139.4 160 50.0
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.7e-30 137.1 156 54.5
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.7e-30 137.1 155 52.3
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 2.9e-30 136.3 229 51.5
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.9e-30 136.3 162 51.2
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 2.1e-28 130.2 164 50.6
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.1e-28 130.2 164 47.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.7e-28 129.8 157 51.0
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.7e-28 129.8 239 40.2
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.0e-27 126.3 155 50.3
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.4e-26 122.9 180 46.1
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 4.4e-26 122.5 170 50.6
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.3e-25 120.9 164 44.5
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 2.2e-25 120.2 220 41.8
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.8e-25 119.8 179 41.3
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 6.3e-25 118.6 168 47.0
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.1e-24 117.9 165 45.5
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.1e-24 117.9 168 45.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.4e-24 117.5 176 44.9
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.4e-24 117.5 171 46.2
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-24 117.5 162 48.1
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.8e-24 117.1 171 45.0
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.4e-24 116.7 192 47.9
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 4.1e-24 115.9 173 47.4
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 4.1e-24 115.9 161 47.8
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 7.0e-24 115.2 156 48.1
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 9.2e-24 114.8 150 46.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 2.0e-23 113.6 155 45.2
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 4.5e-23 112.5 162 46.9
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.5e-23 112.5 154 46.1
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.7e-23 111.7 154 45.5
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.0e-22 111.3 233 38.6
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.0e-22 111.3 169 46.2
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.3e-22 110.9 196 44.9
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.3e-22 110.9 167 39.5
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-22 110.5 152 43.4
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.3e-22 110.2 158 45.6
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 5.0e-22 109.0 167 44.3
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.6e-22 108.6 213 38.5
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 8.6e-22 108.2 184 39.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-21 107.8 166 42.2
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 2.5e-21 106.7 173 40.5
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.6e-21 105.5 213 40.4
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 9.5e-21 104.8 154 46.1
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.2e-20 104.4 168 47.0
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.2e-20 104.4 179 41.9
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 1.2e-20 104.4 235 38.7
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.1e-20 103.6 213 39.9
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.8e-20 103.2 159 39.6
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 2.8e-20 103.2 165 43.6
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 3.6e-20 102.8 183 42.6
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 4.7e-20 102.4 151 42.4
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 4.7e-20 102.4 173 39.9
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 6.1e-20 102.1 173 43.9
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 6.1e-20 102.1 200 42.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.0e-19 101.3 165 43.0
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.0e-19 101.3 165 43.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.4e-19 100.9 179 44.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.8e-19 100.5 181 43.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.3e-19 100.1 200 41.5
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.3e-19 100.1 175 44.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.0e-19 99.8 182 41.2
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 4.0e-19 99.4 159 41.5
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 5.2e-19 99.0 167 48.5
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 6.8e-19 98.6 166 42.8
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 6.8e-19 98.6 166 42.8
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 6.8e-19 98.6 166 42.8
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 6.8e-19 98.6 155 46.5
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 8.9e-19 98.2 176 47.2
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 8.9e-19 98.2 176 47.2
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.2e-18 97.8 172 42.4
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.5e-18 97.4 164 42.7
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.0e-18 97.1 168 40.5
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 2.6e-18 96.7 165 41.8
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 2.6e-18 96.7 165 41.8
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 4.4e-18 95.9 174 40.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.3e-17 94.4 153 41.8
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-17 94.0 164 42.1
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.7e-17 94.0 165 46.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 3.7e-17 92.8 169 39.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.4e-16 90.9 174 39.7
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.4e-16 90.9 156 39.1
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.8e-16 90.5 163 38.7
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.2e-16 89.7 168 43.5
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.1e-16 89.4 137 43.8
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 7.0e-16 88.6 115 51.3
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 9.2e-16 88.2 163 39.9
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.2e-15 87.8 164 40.2
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.2e-15 87.8 181 42.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.5e-15 86.3 162 40.1
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 7.8e-15 85.1 178 36.0
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.0e-14 84.7 158 41.1
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.3e-14 83.6 149 40.9
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 2.3e-14 83.6 166 34.9
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 2.3e-14 83.6 183 36.1
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.3e-13 79.7 165 37.6
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.2e-12 77.8 166 36.7
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.6e-12 76.3 170 33.5
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 6.2e-12 75.5 153 35.9
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.4e-11 74.3 166 32.5
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.8e-11 73.9 98 45.9
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.8e-11 73.9 179 34.6
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.0e-10 70.5 105 43.8
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 9.8e-10 68.2 189 32.8
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 1.3e-09 67.8 120 40.0
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.2e-07 61.2 188 29.8
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-07 60.8 107 41.1
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.0e-06 56.6 49 61.2
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 6.6e-06 55.5 154 30.5


User provided reference genes

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