Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 0.0e+00 1324.3 666 100.0
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 7.5e-257 890.6 663 70.4
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.6e-196 689.5 655 58.3
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.4e-196 688.7 655 58.2
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-192 677.2 658 57.6
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.8e-192 675.6 713 53.4
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 8.8e-181 637.9 692 54.2
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.1e-178 630.9 721 50.3
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.7e-155 553.9 681 49.2
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.4e-154 550.8 661 48.3
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 7.0e-154 548.5 677 48.2
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.7e-152 543.9 657 47.8
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 7.3e-151 538.5 626 50.6
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 6.2e-150 535.4 691 46.9
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.4e-146 524.2 651 47.0
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 1.2e-140 504.6 657 45.5
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.5e-140 504.2 681 44.8
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 4.4e-140 502.7 667 45.0
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.7e-139 500.7 696 44.8
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 3.7e-139 499.6 671 44.3
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 5.4e-138 495.7 685 44.1
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.5e-137 493.0 710 43.4
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 4.6e-137 492.7 672 44.0
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 6.0e-137 492.3 666 44.9
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.3e-136 490.3 688 43.5
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 3.3e-135 486.5 658 44.4
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.6e-134 484.2 670 42.7
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 7.6e-132 475.3 688 43.0
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 9.9e-132 474.9 682 42.8
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 9.9e-132 474.9 682 42.8
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.3e-131 474.6 702 40.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 2.2e-131 473.8 693 44.6
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 3.8e-131 473.0 696 43.5
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.4e-130 471.1 677 44.6
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.4e-130 470.3 661 43.3
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.1e-127 461.5 661 42.5
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 4.3e-127 459.5 654 42.5
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 7.3e-127 458.8 696 41.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 9.6e-127 458.4 661 42.4
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.2e-126 458.0 706 41.1
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 2.1e-126 457.2 639 43.5
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 6.2e-126 455.7 657 42.3
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.4e-125 454.5 636 43.4
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 9.0e-125 451.8 671 43.4
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.1e-122 444.9 725 39.6
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 2.4e-122 443.7 686 41.4
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.2e-121 441.4 687 41.9
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 5.1e-120 436.0 659 40.7
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 5.1e-120 436.0 686 41.4
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 5.6e-119 432.6 725 40.0
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 3.6e-118 429.9 649 40.7
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.1e-117 428.3 689 38.2
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.1e-117 428.3 691 42.0
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 5.3e-117 426.0 700 42.1
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 6.9e-117 425.6 657 42.3
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.5e-116 422.9 679 41.5
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 4.5e-116 422.9 672 41.2
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.4e-114 417.9 669 41.0
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 5.1e-112 409.5 687 39.6
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 5.1e-112 409.5 694 40.6
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.5e-111 407.9 572 44.6
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.3e-110 404.8 600 43.0
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 8.1e-110 402.1 674 40.9
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.1e-109 401.7 642 40.2
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 5.3e-109 399.4 663 41.0
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 3.8e-107 393.3 698 39.4
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.1e-106 391.7 584 42.5
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.3e-103 380.2 480 45.6
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.3e-102 378.3 408 50.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.7e-102 376.7 611 40.1
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.2e-100 371.7 507 46.2
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 2.3e-96 357.5 633 36.7
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 3.9e-96 356.7 724 33.6
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 9.7e-95 352.1 725 33.8
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.1e-93 346.7 548 42.9
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.2e-92 345.1 548 42.7
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 2.0e-92 344.4 683 36.0
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.2e-91 340.9 663 34.8
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.4e-90 338.2 670 36.6
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.3e-88 330.9 655 35.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.9e-88 330.1 735 32.9
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.3e-87 326.6 348 54.3
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.7e-86 324.7 755 32.7
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.1e-85 322.0 578 36.9
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.2e-84 318.5 710 33.9
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.5e-84 318.2 725 32.7
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.5e-84 316.6 675 34.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 4.5e-84 316.6 637 34.5
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 5.9e-84 316.2 637 35.2
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 5.0e-83 313.2 632 34.8
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 6.5e-83 312.8 600 36.5
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 1.1e-82 312.0 687 34.4
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 5.1e-80 303.1 296 55.4
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.3e-79 300.4 659 34.0
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 6.1e-73 279.6 670 31.5
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.7e-72 276.2 305 52.8
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 2.0e-71 274.6 427 40.5
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.7e-70 271.6 646 33.7
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 5.7e-63 246.5 293 46.4
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 4.5e-60 236.9 654 30.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 5.9e-60 236.5 530 32.8
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 5.0e-59 233.4 603 31.0
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.4e-53 214.5 346 39.3
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 7.5e-39 166.4 668 24.7
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 5.0e-35 153.7 460 29.8
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 4.3e-34 150.6 517 26.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.9e-30 137.9 349 32.7
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.4e-29 135.6 442 27.1
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 6.8e-24 116.7 347 27.1
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.9e-22 110.5 431 24.6
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 7.8e-20 103.2 160 39.4
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 6.2e-17 93.6 93 48.4
SMO367G0476 Selaginella moellendorffii HOM05D026854 ORTHO05D008189 1.3e-14 85.9 435 23.9
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.7e-14 85.5 174 32.2
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.6e-12 79.0 622 21.7
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 2.3e-11 75.1 93 45.2
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 1.9e-10 72.0 58 56.9
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 9.0e-08 63.2 189 25.4
Mapoly0024s0131 Marchantia polymorpha HOM05D026854 ORTHO05D008189 3.4e-07 61.2 379 21.4


User provided reference genes

Program Settings