Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 0.0e+00 1385.9 783 100.0
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.0e-265 918.7 812 72.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.2e-254 882.1 758 73.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 1.8e-196 690.3 822 54.7
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 5.3e-193 678.7 834 57.1
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.7e-187 657.9 837 53.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.6e-186 657.1 801 52.3
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.0e-183 647.9 825 53.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.8e-183 646.0 849 53.1
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 4.1e-177 625.9 805 52.4
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.0e-175 621.3 857 49.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.0e-175 621.3 806 53.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.3e-175 620.9 853 49.5
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.3e-175 620.9 905 46.0
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 7.9e-173 611.7 799 49.6
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 9.1e-169 598.2 801 47.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 3.5e-168 596.3 801 47.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.7e-167 594.0 802 48.3
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.1e-161 574.7 705 51.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.7e-160 570.1 798 49.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.7e-160 568.5 768 45.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 6.1e-157 558.9 849 46.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.0e-157 558.5 801 47.1
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.3e-156 557.0 809 44.7
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.8e-156 555.4 810 47.3
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 8.8e-156 555.1 843 46.0
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.8e-154 550.1 820 47.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 3.7e-154 549.7 807 47.1
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.7e-154 549.7 707 48.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.4e-153 547.0 718 46.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 4.1e-153 546.2 767 46.9
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 5.4e-153 545.8 840 45.8
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.0e-153 545.4 684 48.2
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.2e-152 544.7 834 46.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.5e-152 543.1 804 47.3
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 5.9e-152 542.3 826 46.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 5.9e-152 542.3 798 47.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.9e-150 537.3 748 47.6
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.1e-149 533.9 823 47.6
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.0e-147 527.3 779 46.3
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 2.6e-147 526.9 777 45.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 7.5e-147 525.4 766 48.2
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.8e-146 523.5 772 45.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 3.1e-145 520.0 837 45.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 7.0e-145 518.8 869 45.2
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.9e-144 515.8 755 48.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 9.5e-142 508.4 795 44.8
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.0e-140 505.0 842 48.5
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 6.8e-140 502.3 812 44.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.5e-139 501.1 666 49.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 5.7e-139 499.2 740 44.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.1e-137 495.0 692 48.1
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.7e-136 490.3 794 43.3
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.0e-135 486.9 812 43.5
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 5.0e-135 486.1 733 47.3
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 8.6e-135 485.3 690 43.3
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.3e-130 468.8 715 50.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 5.6e-126 456.1 817 40.3
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.1e-124 450.3 782 40.0
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.1e-124 450.3 864 38.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.2e-123 448.4 775 42.2
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 2.0e-123 447.6 805 40.4
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 8.3e-122 442.2 903 40.3
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.0e-120 436.0 802 37.3
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.6e-119 432.6 702 40.3
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.5e-118 428.7 609 43.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.8e-117 427.2 704 39.1
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.2e-117 426.0 805 37.9
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.0e-116 423.3 815 38.7
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 3.4e-115 420.2 800 36.9
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 9.9e-115 418.7 806 38.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.2e-114 417.5 792 38.5
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.9e-113 414.5 788 41.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 4.6e-112 409.8 840 41.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.0e-111 408.7 741 37.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.2e-109 401.7 691 38.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.6e-109 401.4 851 38.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.0e-107 394.4 810 37.0
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 7.6e-107 392.5 707 38.0
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 7.6e-107 392.5 694 40.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.2e-106 391.0 693 39.4
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 4.9e-106 389.8 711 42.1
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.4e-106 389.4 803 37.9
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 7.1e-105 386.0 748 42.1
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 9.3e-105 385.6 894 34.5
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-104 384.4 678 38.1
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-103 381.7 710 40.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 9.6e-102 375.6 708 40.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.3e-101 375.2 724 38.1
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 9.0e-100 369.0 801 36.1
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.6e-99 365.9 775 35.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 7.6e-99 365.9 801 36.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-98 365.2 802 36.2
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.2e-98 364.4 726 39.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.4e-98 362.8 798 36.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.1e-97 362.1 637 44.4
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.1e-97 359.4 746 34.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.0e-95 355.5 712 35.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.3e-94 350.1 701 35.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.4e-92 344.4 847 36.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.3e-90 338.6 826 36.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 8.4e-90 335.9 913 33.4
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.4e-89 334.3 762 33.3
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.7e-88 330.9 931 32.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-85 322.0 859 33.6
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 8.2e-85 319.3 773 32.6
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.6e-83 314.3 301 57.5
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.4e-81 308.5 757 38.4
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.2e-80 305.4 739 34.1
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 7.9e-80 302.8 953 31.4
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 8.2e-77 292.7 750 34.9
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-76 292.0 276 56.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 4.5e-75 287.0 468 43.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-73 280.8 694 30.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.3e-69 268.9 797 32.7
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.2e-64 252.3 279 57.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-63 248.4 574 36.4
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.6e-62 244.6 765 28.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.5e-59 235.3 274 49.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.2e-49 200.7 361 44.9
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 6.1e-48 196.8 388 41.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 6.7e-47 193.4 173 52.0
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.4e-44 185.7 795 25.7
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.3e-37 162.5 172 47.7
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.2e-37 161.8 220 43.6
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 5.4e-36 157.1 140 59.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 6.6e-34 150.2 146 54.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.3e-31 141.7 179 45.8
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 9.8e-30 136.3 763 27.9
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 6.6e-26 123.6 265 32.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.3e-25 121.3 303 31.7
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.3e-25 121.3 309 32.0
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.3e-21 109.4 193 36.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.4e-20 105.1 210 34.8
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.6e-19 102.4 233 34.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 3.0e-18 98.2 76 69.7
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 6.8e-15 87.0 132 38.6
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 9.2e-12 76.6 135 37.8
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.6e-11 75.9 62 61.3
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 1.8e-07 62.4 51 60.8
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 8.9e-07 60.1 87 40.2


User provided reference genes

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