Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.1e-133 479.9 248 100.0
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 8.0e-111 404.1 248 84.3
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.4e-102 376.7 248 77.8
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.5e-98 362.1 248 74.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.5e-96 355.9 248 73.8
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 8.9e-94 347.4 241 74.7
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 6.3e-92 341.3 241 72.2
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-91 339.3 242 71.5
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.1e-91 339.0 238 72.7
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.6e-90 336.7 238 71.8
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.0e-90 336.3 238 72.3
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 1.7e-89 333.2 240 72.5
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.9e-88 329.7 236 72.0
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.2e-87 327.0 240 70.4
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.6e-87 326.6 238 70.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.8e-87 325.9 243 67.1
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.2e-86 321.6 247 68.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.2e-85 320.5 244 66.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.0e-85 319.7 243 66.3
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.4e-85 318.9 242 69.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 5.8e-85 318.2 243 65.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 5.8e-85 318.2 243 66.3
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 5.8e-85 318.2 218 74.8
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 9.8e-85 317.4 242 70.2
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.7e-84 316.6 241 68.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.7e-84 316.6 238 68.1
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.4e-83 313.5 247 67.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.9e-83 313.2 239 68.6
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 7.8e-82 307.8 245 62.9
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.0e-81 307.4 235 67.2
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.3e-81 307.0 243 64.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.7e-81 306.6 238 65.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-81 306.2 236 67.4
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.9e-81 305.4 235 66.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.5e-80 303.5 244 62.7
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.5e-80 303.5 244 62.7
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.9e-80 303.1 236 66.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 7.3e-80 301.2 245 61.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 2.8e-79 299.3 232 64.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.4e-78 297.0 243 64.2
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 5.2e-78 295.0 234 65.4
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 6.8e-78 294.7 237 60.8
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 4.4e-77 292.0 238 63.4
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.9e-75 286.6 265 57.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.4e-75 286.2 269 55.8
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.4e-75 285.0 238 61.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 7.0e-75 284.6 232 64.2
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-74 283.1 238 60.5
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 2.7e-74 282.7 246 60.6
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.0e-73 279.3 271 57.9
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 3.9e-73 278.9 209 67.0
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 8.6e-73 277.7 207 68.6
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 2.5e-72 276.2 196 71.4
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 9.5e-72 274.2 245 58.8
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.8e-71 272.7 200 71.5
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.1e-71 271.2 233 59.7
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 3.1e-70 269.2 207 65.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 3.4e-69 265.8 225 64.9
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.9e-68 262.7 239 57.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 6.4e-68 261.5 210 62.9
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 1.9e-67 260.0 239 56.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.2e-67 259.2 238 55.9
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-66 257.3 239 56.1
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 2.1e-66 256.5 239 56.1
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.8e-66 254.6 280 53.6
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.7e-65 253.4 239 55.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.7e-65 253.4 237 55.3
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.7e-65 253.4 201 63.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.3e-65 253.1 239 55.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.3e-65 253.1 239 55.2
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.3e-65 253.1 227 54.6
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.3e-65 253.1 238 55.5
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 3.9e-65 252.3 239 54.8
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.9e-65 252.3 250 54.8
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.1e-65 251.9 240 52.9
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.9e-64 250.0 233 55.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.9e-64 250.0 248 53.2
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 3.3e-64 249.2 244 53.3
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 5.6e-64 248.4 239 54.8
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 9.5e-64 247.7 238 55.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 6.2e-63 245.0 195 64.1
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 6.2e-63 245.0 196 62.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 8.9e-62 241.1 294 49.7
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.3e-60 237.3 240 52.5
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.7e-60 236.9 240 52.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.2e-60 236.5 248 50.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 8.4e-60 234.6 185 65.4
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.1e-59 234.2 207 62.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.4e-59 233.8 242 56.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.9e-57 225.7 238 51.7
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.6e-53 213.0 238 50.4
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 3.8e-52 209.1 243 49.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 8.4e-52 208.0 196 54.1
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 8.4e-52 208.0 231 52.4
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.4e-51 206.5 196 56.1
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.5e-50 202.6 234 48.3
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 4.3e-48 195.7 184 59.8
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 7.3e-48 194.9 238 44.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-45 187.6 235 42.6
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-45 187.6 224 44.6
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.0e-45 186.8 165 58.8
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 7.1e-43 178.3 238 42.0
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.9e-42 174.9 234 41.5
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 6.2e-39 165.2 154 56.5
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-37 161.0 247 38.5
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-36 157.5 244 35.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-36 156.8 229 42.8
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 4.2e-35 152.5 244 41.4
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 8.7e-33 144.8 225 39.6
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 8.7e-33 144.8 229 38.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.6e-31 140.6 106 64.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-31 140.6 232 38.4
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.6e-31 140.6 125 56.8
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 4.0e-30 136.0 203 37.9
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 5.3e-30 135.6 184 47.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.2e-29 134.4 108 60.2
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.4e-27 127.5 100 63.0
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 3.5e-26 122.9 206 38.8
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.1e-24 117.9 112 54.5
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.3e-24 115.9 147 43.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 9.0e-22 108.2 105 50.5
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.5e-21 107.5 117 52.1
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 3.4e-21 106.3 106 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 4.5e-21 105.9 107 50.5
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 9.4e-19 98.2 108 47.2
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.1e-18 95.5 105 49.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.4e-17 94.4 166 39.8
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.5e-16 90.9 129 44.2
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 5.7e-16 89.0 122 45.1
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 7.7e-13 78.6 71 52.1
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.2e-10 71.2 71 46.5
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-10 70.1 120 36.7
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 1.1e-06 58.2 75 45.3
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-06 57.8 104 37.5
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 7.0e-06 55.5 142 27.5


User provided reference genes

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