Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 2.2e-69 265.4 123 100.0
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 3.3e-49 198.4 124 75.0
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.3e-49 198.4 124 75.0
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 6.2e-48 194.1 124 74.2
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 3.4e-46 188.3 124 70.2
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.7e-45 186.0 124 71.0
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 6.0e-35 151.0 129 64.3
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 1.8e-34 149.4 136 61.8
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 1.9e-33 146.0 136 60.3
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 4.8e-32 141.4 125 59.2
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 8.2e-32 140.6 125 60.8
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 1.4e-31 139.8 125 61.6
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 1.4e-31 139.8 125 62.4
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 1.4e-31 139.8 126 61.9
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 1.8e-31 139.4 139 52.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 1.2e-30 136.7 136 56.6
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 2.0e-30 136.0 144 52.1
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 2.6e-30 135.6 135 55.6
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 3.4e-30 135.2 130 56.9
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 4.5e-30 134.8 139 53.2
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 1.7e-29 132.9 138 58.0
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 2.2e-29 132.5 138 56.5
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 2.9e-29 132.1 141 56.7
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 2.9e-29 132.1 120 58.3
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 4.9e-29 131.3 127 57.5
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 6.5e-29 131.0 136 53.7
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 8.4e-29 130.6 134 57.5
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 8.4e-29 130.6 144 52.8
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 1.9e-28 129.4 138 55.1
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 1.2e-27 126.7 128 55.5
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 1.6e-27 126.3 134 56.0
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 2.1e-27 125.9 126 54.0
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 6.0e-27 124.4 134 53.7
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 6.0e-27 124.4 134 53.7
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 6.0e-27 124.4 144 47.9
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 1.0e-26 123.6 135 54.8
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 1.3e-26 123.2 125 55.2
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.3e-26 123.2 142 52.1
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.8e-26 122.9 127 55.1
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 5.1e-26 121.3 139 51.8
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 5.7e-25 117.9 132 53.0
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 5.7e-25 117.9 133 52.6
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.3e-24 116.7 126 52.4
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.6e-24 116.3 132 52.3
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 2.2e-24 115.9 125 54.4
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 6.3e-24 114.4 132 53.0
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 1.4e-23 113.2 128 47.7
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 4.1e-23 111.7 130 51.5
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 6.9e-23 110.9 130 51.5
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 4.5e-22 108.2 135 45.9
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 7.6e-22 107.5 130 47.7
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.0e-21 107.1 96 59.4
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 1.3e-21 106.7 129 46.5
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.3e-21 106.7 122 49.2
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 5.5e-20 101.3 127 48.8
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 7.2e-20 100.9 94 53.2
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 7.2e-20 100.9 98 55.1
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 6.1e-19 97.8 99 53.5
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.0e-18 97.1 99 54.5
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.4e-18 96.7 126 45.2
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 8.8e-18 94.0 121 41.3
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 1.1e-17 93.6 130 46.2
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 1.1e-17 93.6 129 45.0
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 3.3e-17 92.0 134 44.8
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 5.7e-17 91.3 125 44.8
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 5.7e-17 91.3 125 44.8
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 1.7e-16 89.7 124 44.4
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.2e-16 89.4 125 42.4
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 2.8e-16 89.0 115 44.3
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 2.8e-16 89.0 123 43.1
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 4.8e-16 88.2 113 45.1
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 6.3e-16 87.8 117 44.4
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 4.1e-15 85.1 108 45.4
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 4.5e-14 81.6 124 37.9
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 3.6e-11 72.0 50 74.0
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.0e-10 70.5 131 35.9
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 2.6e-09 65.9 61 50.8
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 6.3e-08 61.2 124 33.1
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 2.4e-07 59.3 51 47.1
Migut.E00292 Erythranthe guttata HOM05D002803 ORTHO05D003089 4.1e-07 58.5 105 38.1
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 7.0e-07 57.8 75 42.7
ECA234G0469 Erigeron canadensis HOM05D002803 ORTHO05D003089 7.0e-07 57.8 66 45.5
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 7.0e-07 57.8 121 30.6
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 9.1e-07 57.4 52 51.9
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 9.1e-07 57.4 44 56.8
Dinv05804 Davidia involucrata HOM05D002803 ORTHO05D003089 9.1e-07 57.4 68 42.6
Eucgr.B03059 Eucalyptus grandis HOM05D002803 ORTHO05D003089 9.1e-07 57.4 61 47.5
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 9.1e-07 57.4 54 48.1
Ah.03g137920 Amaranthus hybridus HOM05D002803 ORTHO05D003089 1.2e-06 57.0 55 50.9
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 1.2e-06 57.0 51 49.0
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 1.2e-06 57.0 44 54.5
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 1.5e-06 56.6 52 50.0
EL10Ac6g14513 Beta vulgaris HOM05D002803 ORTHO05D003089 1.5e-06 56.6 63 47.6
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 1.5e-06 56.6 48 54.2
Lsat_1_v5_gn_4_19240 Lactuca sativa HOM05D002803 ORTHO05D003089 1.5e-06 56.6 66 42.4
QL01p001031 Quercus lobata HOM05D002803 ORTHO05D003089 1.5e-06 56.6 47 55.3
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 2.0e-06 56.2 67 46.3
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.0e-06 56.2 53 49.1
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.0e-06 56.2 53 49.1
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 2.0e-06 56.2 50 50.0
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 2.0e-06 56.2 54 55.6
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.0e-06 56.2 42 57.1
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 2.6e-06 55.8 40 62.5
SalBow8G3504 Salvia bowleyana HOM05D002803 ORTHO05D003089 2.6e-06 55.8 46 60.9
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 3.4e-06 55.5 46 54.3
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 3.4e-06 55.5 53 45.3
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 3.4e-06 55.5 39 66.7
HanXRQChr16g0528841 Helianthus annuus HOM05D002803 ORTHO05D003089 3.4e-06 55.5 42 59.5
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 3.4e-06 55.5 41 58.5
TWI81G0460 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 3.4e-06 55.5 65 41.5
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 4.5e-06 55.1 41 61.0
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 4.5e-06 55.1 45 53.3
Carub.0001s3818 Capsella rubella HOM05D002803 ORTHO05D003089 4.5e-06 55.1 54 46.3
CARHR039030 Cardamine hirsuta HOM05D002803 ORTHO05D003089 4.5e-06 55.1 61 45.9
CDE06G2265 Ceratophyllum demersum HOM05D002803 ORTHO05D003089 4.5e-06 55.1 41 56.1
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 4.5e-06 55.1 42 59.5
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 4.5e-06 55.1 44 54.5
Glyma.05G013700 Glycine max HOM05D002803 ORTHO05D003089 4.5e-06 55.1 51 51.0
Lsat_1_v5_gn_5_24961 Lactuca sativa HOM05D002803 ORTHO05D003089 4.5e-06 55.1 34 70.6
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 4.5e-06 55.1 52 44.2
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 4.5e-06 55.1 40 60.0
TWI15G0724 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 4.5e-06 55.1 65 41.5
ATR0053G026 Amborella trichopoda HOM05D002803 ORTHO05D003089 5.9e-06 54.7 42 57.1
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 5.9e-06 54.7 57 49.1
THA.LOC104821849 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 5.9e-06 54.7 44 59.1
AUR62007738 Chenopodium quinoa HOM05D002803 ORTHO05D003089 7.7e-06 54.3 53 50.9
DCAR_030089 Daucus carota HOM05D002803 ORTHO05D003089 7.7e-06 54.3 42 57.1
PSO017G4670 Papaver somniferum HOM05D002803 ORTHO05D003089 7.7e-06 54.3 41 58.5
PSO478G0765 Papaver somniferum HOM05D002803 ORTHO05D003089 7.7e-06 54.3 41 58.5
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 7.7e-06 54.3 112 33.0


User provided reference genes

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