Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G042400 Prunus persica HOM05D000007 ORTHO05D000039 7.9e-61 236.9 116 100.0
Prupe.5G081900 Prunus persica HOM05D000007 ORTHO05D000039 2.8e-34 148.7 102 72.5
Prupe.2G255600 Prunus persica HOM05D000007 ORTHO05D000039 3.6e-29 131.7 105 63.8
Prupe.2G255800 Prunus persica HOM05D000207 ORTHO05D001482 3.6e-29 131.7 105 63.8
Prupe.4G151100 Prunus persica HOM05D000007 ORTHO05D000039 3.8e-23 111.7 105 56.2
Prupe.4G221400 Prunus persica HOM05D000007 ORTHO05D000039 8.5e-23 110.5 105 54.3
Prupe.4G221500 Prunus persica HOM05D000007 ORTHO05D000039 4.0e-20 101.7 105 56.2
Prupe.5G081800 Prunus persica HOM05D000007 ORTHO05D000039 6.8e-20 100.9 102 55.9
Prupe.4G150700 Prunus persica HOM05D000007 ORTHO05D000039 1.2e-19 100.1 109 51.4
Prupe.4G151000 Prunus persica HOM05D000007 ORTHO05D000039 1.3e-18 96.7 105 52.4
Prupe.4G150900 Prunus persica HOM05D000007 ORTHO05D000039 2.2e-18 95.9 102 53.9
RcHm_v2.0_Chr5g0031751 Rosa chinensis HOM05D000007 ORTHO05D000039 1.7e-15 86.3 92 50.0
MD09G1091100 Malus domestica HOM05D000007 ORTHO05D000039 3.8e-15 85.1 93 48.4
MD03G1028300 Malus domestica HOM05D000007 ORTHO05D000039 2.1e-13 79.3 68 60.3
FvH4_3g41900 Fragaria vesca HOM05D000007 ORTHO05D000039 6.1e-13 77.8 87 48.3
FAN11G0403 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.1e-13 77.8 89 46.1
RcHm_v2.0_Chr5g0075101 Rosa chinensis HOM05D000007 ORTHO05D000039 6.1e-13 77.8 87 50.6
FAN11G3185 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.0e-13 77.4 87 48.3
MD03G1027200 Malus domestica HOM05D000007 ORTHO05D000039 4.0e-12 75.1 63 61.9
FvH4_3g18972 Fragaria vesca HOM05D000007 ORTHO05D000039 6.8e-12 74.3 81 49.4
RcHm_v2.0_Chr5g0075091 Rosa chinensis HOM05D000007 ORTHO05D000039 8.8e-12 73.9 85 47.1
FvH4_3g42380 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-11 73.6 65 55.4
FAN11G3730 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-11 73.6 65 55.4
FAN28G1507 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-11 73.6 65 55.4
MD11G1031400 Malus domestica HOM05D000007 ORTHO05D035523 1.5e-11 73.2 74 51.4
FvH4_3g16860 Fragaria vesca HOM05D000007 ORTHO05D000039 2.0e-11 72.8 75 44.0
FAN11G3498 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.0e-11 72.8 90 41.1
FAN16G0767 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.0e-11 72.8 75 44.0
Prupe.6G096300 Prunus persica HOM05D000007 ORTHO05D000039 2.0e-11 72.8 77 48.1
RcHm_v2.0_Chr5g0075881 Rosa chinensis HOM05D000007 ORTHO05D000039 3.4e-11 72.0 86 48.8
MD15G1381400 Malus domestica HOM05D000007 ORTHO05D000039 4.4e-11 71.6 66 54.5
MD03G1028000 Malus domestica HOM05D000007 ORTHO05D000039 1.3e-10 70.1 71 54.9
FAN25G1711 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.7e-10 69.7 80 48.8
FvH4_3g42390 Fragaria vesca HOM05D000007 ORTHO05D000039 2.2e-10 69.3 65 53.8
MD03G1027900 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-10 69.3 63 57.1
MD03G1028200 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-10 69.3 66 53.0
MD03G1028400 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-10 69.3 66 56.1
RcHm_v2.0_Chr5g0031771 Rosa chinensis HOM05D000007 ORTHO05D000039 2.2e-10 69.3 55 61.8
RcHm_v2.0_Chr5g0031741 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-10 68.9 79 45.6
FAN11G1650 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.7e-10 68.6 88 43.2
FAN21G2178 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.3e-10 67.8 99 38.4
RcHm_v2.0_Chr5g0031761 Rosa chinensis HOM05D000007 ORTHO05D000039 8.3e-10 67.4 79 46.8
RcHm_v2.0_Chr5g0031801 Rosa chinensis HOM05D000007 ORTHO05D000039 8.3e-10 67.4 77 48.1
QL08p020037 Quercus lobata HOM05D000007 ORTHO05D000039 1.8e-09 66.2 64 50.0
RcHm_v2.0_Chr5g0031731 Rosa chinensis HOM05D000007 ORTHO05D000039 2.4e-09 65.9 62 56.5
FvH4_3g41891 Fragaria vesca HOM05D000007 ORTHO05D000039 5.4e-09 64.7 66 51.5
FAN16G1834 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.4e-09 64.7 66 51.5
RcHm_v2.0_Chr1g0348511 Rosa chinensis HOM05D000007 ORTHO05D000039 5.4e-09 64.7 77 46.8
FAN21G3312 Fragaria x ananassa HOM05D000007 ORTHO05D000039 9.1e-09 63.9 86 39.5
FvH4_3g18950 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-08 63.5 58 53.4
FvH4_3g39320 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-08 63.5 71 47.9
FAN11G3242 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-08 63.5 58 53.4
RcHm_v2.0_Chr5g0061121 Rosa chinensis HOM05D000007 ORTHO05D000039 1.6e-08 63.2 71 47.9
Lj1C663T1 Lonicera japonica HOM05D000007 ORTHO05D000039 2.7e-08 62.4 59 47.5
FAN16G3299 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.5e-08 62.0 58 50.0
RcHm_v2.0_Chr3g0482231 Rosa chinensis HOM05D000007 ORTHO05D000039 3.5e-08 62.0 63 50.8
Lj1C663T2 Lonicera japonica HOM05D000007 ORTHO05D000039 4.5e-08 61.6 59 50.8
RcHm_v2.0_Chr1g0350191 Rosa chinensis HOM05D000007 ORTHO05D000039 4.5e-08 61.6 63 47.6
RcHm_v2.0_Chr3g0482251 Rosa chinensis HOM05D000007 ORTHO05D000039 4.5e-08 61.6 63 50.8
FvH4_3g18960 Fragaria vesca HOM05D000007 ORTHO05D000039 5.9e-08 61.2 69 47.8
FAN25G3153 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.9e-08 61.2 64 50.0
vmacro20453 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.9e-08 61.2 64 45.3
QL08p020067 Quercus lobata HOM05D000007 ORTHO05D000039 1.0e-07 60.5 65 43.1
RcHm_v2.0_Chr5g0067481 Rosa chinensis HOM05D000007 ORTHO05D000039 1.0e-07 60.5 73 43.8
Thecc.07G075500 Theobroma cacao HOM05D000007 ORTHO05D000039 1.0e-07 60.5 60 48.3
FvH4_3g16850 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-07 60.1 46 58.7
FvH4_7g11690 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-07 60.1 63 47.6
FAN11G3667 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.3e-07 60.1 58 48.3
QL08p020102 Quercus lobata HOM05D000007 ORTHO05D043361 1.3e-07 60.1 66 43.9
FAN21G2633 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.7e-07 59.7 69 47.8
Hma1.2p1_0036F.1_g023640 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.7e-07 59.7 70 42.9
Manes.09G122100 Manihot esculenta HOM05D000007 ORTHO05D000039 1.7e-07 59.7 60 48.3
Prupe.4G156000 Prunus persica HOM05D000007 ORTHO05D000039 1.7e-07 59.7 65 46.2
QL07p003322 Quercus lobata HOM05D000007 ORTHO05D000039 1.7e-07 59.7 59 49.2
FvH4_3g18911 Fragaria vesca HOM05D000007 ORTHO05D000039 2.3e-07 59.3 69 46.4
FAN21G2501 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.3e-07 59.3 69 47.8
RcHm_v2.0_Chr5g0070761 Rosa chinensis HOM05D000007 ORTHO05D000039 2.3e-07 59.3 71 46.5
FvH4_3g39330 Fragaria vesca HOM05D000007 ORTHO05D000039 2.9e-07 58.9 83 39.8
FAN11G2343 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.9e-07 58.9 69 46.4
FAN11G3224 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.9e-07 58.9 83 39.8
FAN21G2298 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.9e-07 58.9 83 39.8
Prupe.4G210300 Prunus persica HOM05D000007 ORTHO05D000039 2.9e-07 58.9 71 45.1
FvH4_5g35130 Fragaria vesca HOM05D000007 ORTHO05D000039 3.8e-07 58.5 63 44.4
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 3.8e-07 58.5 66 48.5
FAN06G0669 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-07 58.5 70 41.4
FAN06G4010 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-07 58.5 70 41.4
FAN11G1989 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-07 58.5 61 52.5
FAN21G3832 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-07 58.5 84 38.1
Peaxi162Scf00469g00073 Petunia axillaris HOM05D000007 ORTHO05D000039 3.8e-07 58.5 67 44.8
Peaxi162Scf00469g00087 Petunia axillaris HOM05D000007 ORTHO05D000039 3.8e-07 58.5 59 47.5
RcHm_v2.0_Chr5g0067551 Rosa chinensis HOM05D000007 ORTHO05D000039 3.8e-07 58.5 73 42.5
FvH4_3g16840 Fragaria vesca HOM05D000007 ORTHO05D000039 5.0e-07 58.2 56 48.2
FvH4_3g18890 Fragaria vesca HOM05D000007 ORTHO05D000039 5.0e-07 58.2 61 52.5
FvH4_4g11831 Fragaria vesca HOM05D064558 ORTHO05D000039 5.0e-07 58.2 60 46.7
FAN11G0632 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.0e-07 58.2 61 52.5
FAN28G0121 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.0e-07 58.2 63 49.2
PSO339G3943 Papaver somniferum HOM05D000007 ORTHO05D000017 5.0e-07 58.2 55 50.9
PSO675G0148 Papaver somniferum HOM05D000007 ORTHO05D000017 5.0e-07 58.2 78 39.7
QL03p005911 Quercus lobata HOM05D000007 ORTHO05D000039 5.0e-07 58.2 77 42.9
QL04p064452 Quercus lobata HOM05D000007 ORTHO05D000039 5.0e-07 58.2 77 42.9
Haze_09500 Corylus avellana HOM05D000007 ORTHO05D000039 6.6e-07 57.8 95 42.1
FvH4_1g26450 Fragaria vesca HOM05D000007 ORTHO05D000039 6.6e-07 57.8 63 49.2
FvH4_3g18910 Fragaria vesca HOM05D000007 ORTHO05D000039 6.6e-07 57.8 62 45.2
FvH4_6g25310 Fragaria vesca HOM05D000007 ORTHO05D000039 6.6e-07 57.8 69 43.5
FAN10G0938 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.6e-07 57.8 72 41.7
FAN16G0092 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.6e-07 57.8 61 52.5
FAN19G1125 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.6e-07 57.8 63 49.2
Lj1C671T7 Lonicera japonica HOM05D000007 ORTHO05D000039 6.6e-07 57.8 78 37.2
MD15G1089700 Malus domestica HOM05D000007 ORTHO05D000039 6.6e-07 57.8 58 51.7
QL03p005929 Quercus lobata HOM05D000007 ORTHO05D000039 6.6e-07 57.8 70 42.9
QL08p020302 Quercus lobata HOM05D000007 ORTHO05D000039 6.6e-07 57.8 102 31.4
COL.COLO4_29230 Corchorus olitorius HOM05D000007 ORTHO05D000039 8.6e-07 57.4 47 51.1
FAN10G3851 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.6e-07 57.4 68 42.6
Lj1A671T54 Lonicera japonica HOM05D000007 ORTHO05D000039 8.6e-07 57.4 53 49.1
QL03p005922 Quercus lobata HOM05D000007 ORTHO05D000039 8.6e-07 57.4 70 44.3
QL04p064435 Quercus lobata HOM05D000007 ORTHO05D000039 8.6e-07 57.4 70 44.3
QL04p064442 Quercus lobata HOM05D000007 ORTHO05D000039 8.6e-07 57.4 70 44.3
Dinv38200 Davidia involucrata HOM05D000007 ORTHO05D000017 1.1e-06 57.0 50 52.0
FAN03G2844 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-06 57.0 63 47.6
Lj1A671T53 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-06 57.0 53 49.1
Peaxi162Scf00038g00024 Petunia axillaris HOM05D000007 ORTHO05D000039 1.1e-06 57.0 67 46.3
Prupe.3G110400 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-06 57.0 61 45.9
Prupe.3G110600 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-06 57.0 61 45.9
QL08p020282 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-06 57.0 66 47.0
RcHm_v2.0_Chr5g0030021 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-06 57.0 74 40.5
Sabra11G0106500 Salix brachista HOM05D000007 ORTHO05D000039 1.1e-06 57.0 61 41.0
COL.COLO4_28176 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.5e-06 56.6 55 47.3
COL.COLO4_31811 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.5e-06 56.6 65 44.6
Duzib268G1877 Durio zibethinus HOM05D000007 ORTHO05D000039 1.5e-06 56.6 60 48.3
FvH4_5g11823 Fragaria vesca HOM05D000007 ORTHO05D000039 1.5e-06 56.6 70 45.7
FvH4_7g11670 Fragaria vesca HOM05D000007 ORTHO05D000039 1.5e-06 56.6 76 39.5
FAN23G0519 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.5e-06 56.6 58 51.7
Gohir.D11G296400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.5e-06 56.6 61 45.9
Gorai.007G319500 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.5e-06 56.6 61 45.9
PSO170G5178 Papaver somniferum HOM05D000007 ORTHO05D000017 1.5e-06 56.6 82 34.1
RcHm_v2.0_Chr5g0028051 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-06 56.6 83 43.4
Sabra11G0106300 Salix brachista HOM05D000007 ORTHO05D000039 1.5e-06 56.6 61 41.0
DCAR_023489 Daucus carota HOM05D000007 ORTHO05D000017 1.9e-06 56.2 61 42.6
FAN21G0203 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.9e-06 56.2 56 46.4
FAN21G3753 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.9e-06 56.2 56 46.4
Glyma.10G199800 Glycine max HOM05D000007 ORTHO05D000039 1.9e-06 56.2 62 53.2
Lju225C3T2 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-06 56.2 86 39.5
PSO384G0988 Papaver somniferum HOM05D000007 ORTHO05D000017 1.9e-06 56.2 52 50.0
Sabra11G0106100 Salix brachista HOM05D000007 ORTHO05D000039 1.9e-06 56.2 61 39.3
COL.COLO4_35211 Corchorus olitorius HOM05D000007 ORTHO05D000039 2.5e-06 55.8 54 48.1
Dinv04899 Davidia involucrata HOM05D000007 ORTHO05D000039 2.5e-06 55.8 75 44.0
FvH4_5g29450 Fragaria vesca HOM05D000007 ORTHO05D000039 2.5e-06 55.8 63 46.0
FAN19G0203 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.5e-06 55.8 60 50.0
Gohir.A11G282760 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.5e-06 55.8 61 45.9
Lj5g0027399 Lotus japonicus HOM05D000007 ORTHO05D000039 2.5e-06 55.8 49 53.1
MD12G1183200 Malus domestica HOM05D000007 ORTHO05D000039 2.5e-06 55.8 86 37.2
PSO513G0193 Papaver somniferum HOM05D000007 ORTHO05D000017 2.5e-06 55.8 61 50.8
Potri.011G121200 Populus trichocarpa HOM05D000007 ORTHO05D000039 2.5e-06 55.8 68 41.2
Prupe.8G212900 Prunus persica HOM05D000007 ORTHO05D000039 2.5e-06 55.8 59 49.2
QL08p019850 Quercus lobata HOM05D000007 ORTHO05D000039 2.5e-06 55.8 70 41.4
COL.COLO4_28181 Corchorus olitorius HOM05D000007 ORTHO05D000039 3.3e-06 55.5 66 42.4
FAN11G2583 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.3e-06 55.5 71 46.5
Hma1.2p1_0036F.1_g023670 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 3.3e-06 55.5 62 38.7
PSO724G0143 Papaver somniferum HOM05D000007 ORTHO05D000039 3.3e-06 55.5 85 40.0
QL11p000252 Quercus lobata HOM05D000007 ORTHO05D000039 3.3e-06 55.5 77 39.0
FAN06G1206 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.2e-06 55.1 63 44.4
FAN10G1832 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.2e-06 55.1 63 44.4
FAN10G3302 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.2e-06 55.1 63 44.4
FAN26G0097 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.2e-06 55.1 63 47.6
QL11p051030 Quercus lobata HOM05D000007 ORTHO05D000039 4.2e-06 55.1 67 43.3
Migut.N02979 Erythranthe guttata HOM05D000007 ORTHO05D000017 5.5e-06 54.7 64 43.8
FAN02G3393 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.5e-06 54.7 48 50.0
FAN06G2092 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.5e-06 54.7 63 44.4
FAN18G2360 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.5e-06 54.7 68 47.1
FAN19G1395 Fragaria x ananassa HOM05D000007 ORTHO05D000039 5.5e-06 54.7 55 45.5
Manes.10G133200 Manihot esculenta HOM05D000007 ORTHO05D000039 5.5e-06 54.7 68 39.7
PSO675G3821 Papaver somniferum HOM05D000007 ORTHO05D000017 5.5e-06 54.7 55 43.6
Prupe.3G013300 Prunus persica HOM05D000007 ORTHO05D000039 5.5e-06 54.7 42 54.8
RcHm_v2.0_Chr2g0116421 Rosa chinensis HOM05D000007 ORTHO05D000039 5.5e-06 54.7 42 57.1
RcHm_v2.0_Chr2g0116451 Rosa chinensis HOM05D000007 ORTHO05D000039 5.5e-06 54.7 56 46.4
RcHm_v2.0_Chr5g0054431 Rosa chinensis HOM05D000007 ORTHO05D000039 5.5e-06 54.7 72 44.4
COL.COLO4_10296 Corchorus olitorius HOM05D000007 ORTHO05D000039 7.2e-06 54.3 62 41.9
Migut.M00306 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.2e-06 54.3 60 51.7
Lju1074C2T0 Lonicera japonica HOM05D000007 ORTHO05D000039 7.2e-06 54.3 57 49.1
QL07p003237 Quercus lobata HOM05D000007 ORTHO05D000039 7.2e-06 54.3 57 47.4
MSTRG.6523 Avicennia marina HOM05D000007 ORTHO05D000039 9.5e-06 53.9 60 48.3
COL.COLO4_09165 Corchorus olitorius HOM05D000007 ORTHO05D000039 9.5e-06 53.9 54 46.3
COL.COLO4_19182 Corchorus olitorius HOM05D000007 ORTHO05D000039 9.5e-06 53.9 50 46.0
FAN11G0526 Fragaria x ananassa HOM05D000007 ORTHO05D000039 9.5e-06 53.9 52 48.1
MD08G1108400 Malus domestica HOM05D000007 ORTHO05D000039 9.5e-06 53.9 41 61.0
Prupe.6G294100 Prunus persica HOM05D000007 ORTHO05D000039 9.5e-06 53.9 60 50.0
QL09p022599 Quercus lobata HOM05D000007 ORTHO05D000039 9.5e-06 53.9 71 38.0
QL11p003889 Quercus lobata HOM05D000007 ORTHO05D000039 9.5e-06 53.9 47 44.7


User provided reference genes

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