Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.9e-76 288.9 190 100.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.2e-60 236.1 193 82.4
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.9e-59 233.0 192 88.5
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.7e-58 229.2 191 86.4
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 9.6e-56 220.7 192 85.4
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.0e-53 213.0 190 62.6
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 4.4e-53 211.8 190 63.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.2e-52 209.5 187 86.6
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.4e-52 208.0 194 64.9
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 8.4e-52 207.6 190 73.7
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 8.4e-52 207.6 190 64.7
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.4e-51 206.8 191 61.8
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.9e-51 206.5 179 78.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 7.1e-51 204.5 194 77.3
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.1e-51 204.5 196 59.7
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 1.6e-50 203.4 191 77.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.6e-50 203.4 194 79.4
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.7e-50 202.6 195 63.1
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 3.5e-50 202.2 205 59.5
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.0e-50 201.4 205 59.0
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 6.0e-50 201.4 193 76.7
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.3e-49 200.3 195 68.7
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.3e-49 200.3 192 66.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.7e-49 199.9 192 74.0
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.3e-49 199.5 191 71.2
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.0e-49 199.1 198 63.1
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.9e-49 198.7 148 87.2
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.9e-49 198.7 190 67.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 6.6e-49 198.0 190 73.7
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 6.6e-49 198.0 194 73.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.5e-48 196.8 193 73.1
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 2.5e-48 196.1 202 57.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 4.3e-48 195.3 199 69.8
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 7.3e-48 194.5 198 68.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.3e-47 193.7 200 58.5
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.1e-47 193.0 195 58.5
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.8e-47 192.6 202 62.4
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.8e-47 192.6 192 75.0
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 6.2e-47 191.4 192 74.0
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 1.4e-46 190.3 192 70.3
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.4e-46 190.3 195 76.9
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.8e-46 189.9 199 56.8
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.8e-46 189.9 192 76.0
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 3.1e-46 189.1 194 67.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 4.0e-46 188.7 200 55.0
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.0e-46 188.7 154 72.7
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 5.3e-46 188.3 154 78.6
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 9.0e-46 187.6 153 81.0
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 9.0e-46 187.6 191 60.7
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.5e-45 186.8 190 62.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 4.5e-45 185.3 192 67.7
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.5e-45 185.3 190 66.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.5e-45 185.3 192 58.9
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 5.8e-45 184.9 191 60.2
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.3e-44 183.7 195 63.1
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.2e-44 183.0 190 65.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.2e-44 183.0 194 63.4
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.9e-44 182.6 194 66.0
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.9e-44 182.6 190 70.0
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.9e-44 181.8 190 67.4
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.9e-44 181.8 190 65.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 6.4e-44 181.4 192 57.8
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 8.4e-44 181.0 192 59.4
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 8.4e-44 181.0 192 57.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.1e-43 180.6 154 66.2
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.1e-43 180.6 194 68.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.4e-43 180.3 197 73.1
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 198 66.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.4e-43 179.5 197 62.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 2.4e-43 179.5 191 66.5
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.4e-43 179.5 193 65.8
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 3.2e-43 179.1 191 67.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.2e-43 179.1 192 60.9
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.2e-43 178.7 191 68.1
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 5.5e-43 178.3 190 67.4
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 191 67.0
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 192 62.0
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-42 177.2 192 62.0
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 2.7e-42 176.0 191 69.6
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.5e-42 175.6 192 64.1
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 6.0e-42 174.9 204 52.9
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 7.9e-42 174.5 204 59.8
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 7.9e-42 174.5 194 68.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.0e-41 174.1 192 69.8
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.3e-41 173.7 190 58.9
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.8e-41 173.3 191 69.1
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.8e-41 173.3 145 72.4
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 2.3e-41 172.9 185 59.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.1e-41 171.8 192 63.5
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 5.1e-41 171.8 196 50.5
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.7e-41 171.4 205 52.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 8.7e-41 171.0 200 55.5
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 8.7e-41 171.0 192 60.9
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.9e-40 169.9 200 55.0
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.9e-40 169.9 191 63.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.9e-40 169.9 191 62.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.5e-40 169.5 195 66.7
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.5e-40 169.5 195 59.5
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 4.3e-40 168.7 145 69.0
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.6e-40 168.3 192 58.9
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 7.4e-40 167.9 190 65.3
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 7.4e-40 167.9 190 65.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 9.6e-40 167.5 191 63.4
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.6e-40 167.5 192 65.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.3e-39 167.2 190 69.5
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 2.8e-39 166.0 157 70.1
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.7e-39 165.6 191 63.9
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.4e-38 163.7 206 54.9
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.4e-38 162.9 145 75.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.4e-38 162.9 190 61.1
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 6.9e-38 161.4 140 63.6
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.2e-37 160.6 190 60.5
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.2e-37 160.6 151 62.3
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.5e-37 160.2 191 63.9
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 3.4e-37 159.1 225 59.1
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.4e-37 159.1 85 90.6
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 3.8e-36 155.6 99 79.8
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 2.5e-35 152.9 209 53.1
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 7.1e-35 151.4 172 65.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.5e-34 149.1 199 46.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 3.5e-34 149.1 78 92.3
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.0e-34 148.3 99 76.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.0e-33 147.5 164 52.4
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 9.6e-32 141.0 130 71.5
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.7e-28 130.2 75 84.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 5.0e-28 128.6 70 85.7
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.1e-27 127.5 69 84.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.0e-25 120.9 155 58.7
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 5.3e-22 108.6 62 83.9
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 6.9e-22 108.2 82 62.2
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.2e-21 107.5 67 82.1
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 2.0e-21 106.7 116 63.8
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 3.4e-21 105.9 170 57.1
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.5e-21 105.5 137 58.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 5.9e-21 105.1 117 54.7
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 6.5e-20 101.7 158 57.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.9e-19 100.1 125 60.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 5.5e-19 98.6 80 58.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.4e-17 94.0 84 56.0
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.4e-17 94.0 80 55.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.5e-16 90.5 148 56.1
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.3e-14 82.0 47 78.7
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 2.1e-10 70.1 65 53.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.7e-07 59.3 39 61.5
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 4.8e-07 58.9 115 47.8


User provided reference genes

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