Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 0.0e+00 4420.2 2309 100.0
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.0e-284 984.9 2371 37.1
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.5e-99 368.2 2590 25.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 1.6e-83 316.6 2616 24.5
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 1.9e-81 309.7 2067 26.3
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 4.2e-81 308.5 2147 25.3
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 3.1e-76 292.4 2126 24.8
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.1e-76 292.4 2559 24.2
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 1.2e-70 273.9 1693 27.0
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.6e-64 253.4 1627 24.6
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.4e-62 245.7 974 29.0
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 8.9e-47 194.5 762 29.7
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 2.4e-44 186.4 755 30.1
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 5.4e-36 158.7 739 30.3
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 3.0e-34 152.9 1247 24.4
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 6.6e-34 151.8 240 42.5
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 2.4e-31 143.3 837 27.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 3.5e-27 129.4 224 41.5
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 1.3e-26 127.5 224 41.1
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 2.3e-26 126.7 297 36.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 8.7e-26 124.8 589 28.4
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 1.6e-24 120.6 592 28.2
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 3.7e-24 119.4 1277 23.3
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 8.1e-24 118.2 404 34.4
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 5.8e-22 112.1 592 27.9
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.2e-20 106.3 509 25.9
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 3.9e-18 99.4 434 29.3
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 2.5e-17 96.7 598 26.1
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 3.7e-16 92.8 1296 23.5
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 8.2e-16 91.7 178 38.8
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 2.4e-15 90.1 520 27.7
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 4.0e-15 89.4 842 23.8
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 9.0e-15 88.2 87 51.7
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.2e-14 87.8 415 28.4
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.0e-14 87.0 119 42.9
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 7.6e-14 85.1 778 21.7
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 7.6e-14 85.1 327 29.1
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 2.9e-13 83.2 476 26.7
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 6.5e-13 82.0 200 34.0
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 8.4e-13 81.6 545 26.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 1.4e-12 80.9 87 50.6
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.5e-12 79.0 279 28.7
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 1.6e-11 77.4 482 26.3
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 3.5e-11 76.3 150 38.7
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 4.6e-11 75.9 223 33.2
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 6.0e-11 75.5 88 51.1
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 7.9e-11 75.1 368 28.0
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 1.3e-10 74.3 202 29.2
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.8e-10 73.9 151 36.4
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 2.3e-10 73.6 81 45.7
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 3.9e-10 72.8 67 56.7
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 3.9e-10 72.8 672 25.1
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 5.1e-10 72.4 90 43.3
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 6.7e-10 72.0 200 35.0
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.5e-09 70.9 83 48.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 2.5e-09 70.1 82 45.1
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 5.7e-09 68.9 81 44.4
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 5.7e-09 68.9 148 35.8
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 9.7e-09 68.2 293 28.3
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 1.3e-08 67.8 172 35.5
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 1.3e-08 67.8 145 34.5
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 2.2e-08 67.0 298 29.2
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 4.8e-08 65.9 62 53.2
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 4.1e-07 62.8 84 46.4
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 6.9e-07 62.0 41 65.9
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 3.4e-06 59.7 148 30.4
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 3.4e-06 59.7 191 30.4
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 5.9e-06 58.9 41 63.4


User provided reference genes

Program Settings