Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 4.0e-57 225.3 194 100.0
MD05G1028100 Malus domestica HOM05D002879 ORTHO05D002930 6.0e-21 105.1 169 69.8
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 7.8e-21 104.8 193 48.2
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 5.6e-19 98.6 199 66.8
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 7.3e-19 98.2 199 61.3
RcHm_v2.0_Chr6g0274981 Rosa chinensis HOM05D002879 ORTHO05D002930 1.8e-17 93.6 196 69.4
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 6.9e-17 91.7 200 56.0
FAN15G0525 Fragaria x ananassa HOM05D002879 ORTHO05D002930 1.5e-16 90.5 198 63.1
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 2.6e-16 89.7 153 47.1
Prupe.6G160200 Prunus persica HOM05D002879 ORTHO05D002930 7.6e-16 88.2 141 53.9
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 2.9e-15 86.3 90 56.7
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 6.4e-15 85.1 116 53.4
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 1.2e-13 80.9 96 78.1
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.1e-13 80.1 90 75.6
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 2.7e-13 79.7 88 83.0
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 4.6e-13 79.0 194 45.4
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 4.6e-13 79.0 93 53.8
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 1.0e-12 77.8 90 81.1
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 3.0e-12 76.3 93 55.9
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 3.9e-12 75.9 195 45.1
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 3.9e-12 75.9 92 53.3
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 5.1e-12 75.5 93 55.9
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 6.6e-12 75.1 96 76.0
Eucgr.D00723 Eucalyptus grandis HOM05D002879 ORTHO05D002930 6.6e-12 75.1 191 48.7
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 6.6e-12 75.1 90 50.0
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 8.7e-12 74.7 212 53.8
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 1.1e-11 74.3 222 53.2
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 1.1e-11 74.3 93 60.2
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.5e-11 73.9 94 59.6
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 1.5e-11 73.9 92 76.1
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 1.5e-11 73.9 89 68.5
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 1.9e-11 73.6 151 49.0
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 1.9e-11 73.6 93 50.5
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 1.9e-11 73.6 87 62.1
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-11 73.2 260 36.2
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 3.3e-11 72.8 210 57.6
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 3.3e-11 72.8 193 48.2
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 3.3e-11 72.8 151 53.6
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 3.3e-11 72.8 92 66.3
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 4.3e-11 72.4 91 61.5
PGR044G2207 Punica granatum HOM05D002879 ORTHO05D002930 4.3e-11 72.4 195 47.7
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 5.6e-11 72.0 93 53.8
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 5.6e-11 72.0 95 65.3
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 9.6e-11 71.2 194 41.2
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 1.6e-10 70.5 63 79.4
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 2.1e-10 70.1 93 65.6
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.6e-10 69.3 93 63.4
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 3.6e-10 69.3 93 63.4
Glyma.16G166600 Glycine max HOM05D002879 ORTHO05D002930 4.8e-10 68.9 90 75.6
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 4.8e-10 68.9 50 86.0
QL02p038867 Quercus lobata HOM05D002879 ORTHO05D002930 4.8e-10 68.9 194 49.0
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 8.1e-10 68.2 89 73.0
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.1e-10 68.2 92 77.2
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.1e-10 68.2 92 77.2
Manes.18G093201 Manihot esculenta HOM05D002879 ORTHO05D002930 1.1e-09 67.8 93 76.3
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 1.8e-09 67.0 92 64.1
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.8e-09 67.0 92 63.0
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 1.8e-09 67.0 90 61.1
MELO3C025026.2 Cucumis melo HOM05D002879 ORTHO05D002930 3.1e-09 66.2 87 59.8
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 5.3e-09 65.5 95 71.6
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 5.3e-09 65.5 95 72.6
Cfa018311 Carpinus fangiana HOM05D066527 ORTHO05D002930 5.3e-09 65.5 158 46.8
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 6.9e-09 65.1 52 76.9
TAR381G1351 Trochodendron aralioides HOM05D002879 ORTHO05D002930 6.9e-09 65.1 96 75.0
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.2e-08 64.3 89 64.0
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.2e-08 64.3 89 64.0
Eucgr.E02069 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.5e-08 63.9 84 59.5
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.5e-08 63.9 84 58.3
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.5e-08 63.9 96 58.3
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 2.0e-08 63.5 52 57.7
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 2.6e-08 63.2 89 65.2
Eucgr.E02064 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.4e-08 62.8 94 59.6
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 3.4e-08 62.8 85 67.1
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.5e-08 62.4 89 77.5
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 4.5e-08 62.4 90 68.9
Eucgr.E02065 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.5e-08 62.4 84 58.3
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 4.5e-08 62.4 67 70.1
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 4.5e-08 62.4 52 55.8
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 4.5e-08 62.4 93 59.1
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 5.8e-08 62.0 54 79.6
Dinv25878 Davidia involucrata HOM05D002879 ORTHO05D002930 5.8e-08 62.0 89 71.9
Eucgr.E02070 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.8e-08 62.0 84 58.3
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 5.8e-08 62.0 87 55.2
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 9.9e-08 61.2 195 50.8
CsaV3_6G002590 Cucumis sativus L. HOM05D035606 ORTHO05D002930 1.3e-07 60.8 89 77.5
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.3e-07 60.8 194 37.1
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.7e-07 60.5 201 42.3
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.7e-07 60.5 80 65.0
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 2.2e-07 60.1 92 73.9
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 2.9e-07 59.7 200 36.0
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.9e-07 59.7 47 57.4
Prupe.8G034200 Prunus persica HOM05D002879 ORTHO05D002930 2.9e-07 59.7 67 79.1
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 3.8e-07 59.3 89 74.2
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 3.8e-07 59.3 87 58.6
MELO3C025025.2 Cucumis melo HOM05D035606 ORTHO05D002930 4.9e-07 58.9 89 76.4
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 4.9e-07 58.9 67 80.6
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 4.9e-07 58.9 49 55.1
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 6.4e-07 58.5 95 58.9
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 6.4e-07 58.5 66 77.3
Phvul.004G094600 Phaseolus vulgaris HOM05D002879 ORTHO05D002930 6.4e-07 58.5 90 74.4
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.4e-07 58.5 88 58.0
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.4e-07 58.5 86 59.3
AUR62040592 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.4e-06 57.4 117 64.1
CsaV3_6G002580 Cucumis sativus L. HOM05D002879 ORTHO05D002930 1.4e-06 57.4 93 72.0
Eucgr.E02066 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.4e-06 57.4 84 58.3
Eucgr.L02884 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.4e-06 57.4 84 59.5
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 1.4e-06 57.4 54 48.1
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 1.9e-06 57.0 93 41.9
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.9e-06 57.0 67 55.2
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 3.2e-06 56.2 51 51.0
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 3.2e-06 56.2 86 70.9
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 3.2e-06 56.2 46 60.9
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.2e-06 56.2 48 54.2
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.2e-06 56.2 48 54.2
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.2e-06 56.2 89 61.8
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.2e-06 55.8 90 41.1
PGR044G2425 Punica granatum HOM05D002879 ORTHO05D002930 4.2e-06 55.8 91 69.2
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.2e-06 55.8 190 37.4
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.4e-06 55.5 90 53.3
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 7.1e-06 55.1 48 66.7
COL.COLO4_29858 Corchorus olitorius HOM05D002879 ORTHO05D002930 9.3e-06 54.7 194 44.8
TWI34G1982 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 9.3e-06 54.7 194 40.7
Zm00001eb083180 Zea mays HOM05D002879 ORTHO05D002930 9.3e-06 54.7 76 56.6


User provided reference genes

Program Settings