Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 1.1e-68 263.1 123 100.0
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 5.4e-44 181.0 90 92.2
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 2.7e-43 178.7 90 91.1
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.6e-43 177.9 89 91.0
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.0e-43 177.6 89 92.1
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 6.0e-43 177.6 89 92.1
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 7.9e-43 177.2 89 89.9
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.3e-42 175.6 89 89.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 2.3e-42 175.6 89 89.9
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 2.3e-42 175.6 89 89.9
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.3e-42 175.6 89 89.9
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.0e-42 175.3 89 89.9
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 3.9e-42 174.9 89 88.8
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 3.9e-42 174.9 89 88.8
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.9e-42 174.9 89 88.8
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.9e-42 174.9 89 88.8
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 5.1e-42 174.5 89 88.8
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 5.1e-42 174.5 87 89.7
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 5.1e-42 174.5 87 89.7
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 5.1e-42 174.5 90 87.8
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.7e-42 174.1 89 88.8
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 6.7e-42 174.1 89 88.8
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 8.7e-42 173.7 89 88.8
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 8.7e-42 173.7 88 89.8
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.1e-41 173.3 88 87.5
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 1.1e-41 173.3 89 86.5
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 1.1e-41 173.3 88 87.5
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.5e-41 172.9 88 88.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.5e-41 172.9 89 87.6
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.5e-41 172.9 89 87.6
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.9e-41 172.6 88 88.6
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 1.9e-41 172.6 88 88.6
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.9e-41 172.6 89 87.6
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.9e-41 172.6 89 87.6
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.9e-41 172.6 88 88.6
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 2.5e-41 172.2 88 87.5
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 2.5e-41 172.2 89 87.6
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 2.5e-41 172.2 89 87.6
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.3e-41 171.8 89 86.5
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.3e-41 171.8 89 86.5
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 3.3e-41 171.8 89 85.4
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 3.3e-41 171.8 88 88.6
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 4.3e-41 171.4 88 88.6
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 4.3e-41 171.4 87 87.4
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 4.3e-41 171.4 89 86.5
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 5.6e-41 171.0 88 88.6
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 5.6e-41 171.0 88 86.4
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 7.4e-41 170.6 92 83.7
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 7.4e-41 170.6 92 83.7
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 7.4e-41 170.6 89 84.3
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 9.6e-41 170.2 88 86.4
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.6e-41 170.2 88 87.5
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 9.6e-41 170.2 88 87.5
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 9.6e-41 170.2 89 86.5
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 9.6e-41 170.2 88 87.5
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.6e-40 169.5 89 86.5
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 2.1e-40 169.1 89 84.3
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 2.1e-40 169.1 89 86.5
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.8e-40 168.7 90 86.7
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.8e-40 168.7 88 86.4
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 2.8e-40 168.7 88 86.4
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 3.7e-40 168.3 88 86.4
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 3.7e-40 168.3 89 85.4
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 4.8e-40 167.9 89 85.4
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 4.8e-40 167.9 88 84.1
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 4.8e-40 167.9 88 85.2
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 6.2e-40 167.5 88 85.2
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 6.2e-40 167.5 89 84.3
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 8.1e-40 167.2 88 86.4
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 8.1e-40 167.2 89 84.3
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 8.1e-40 167.2 89 84.3
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 1.1e-39 166.8 89 85.4
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.1e-39 166.8 89 84.3
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 1.4e-39 166.4 88 84.1
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.4e-39 166.4 89 83.1
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 2.4e-39 165.6 88 84.1
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 2.4e-39 165.6 89 83.1
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 3.1e-39 165.2 89 82.0
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 3.1e-39 165.2 88 85.2
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.1e-39 165.2 87 85.1
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.1e-39 165.2 88 83.0
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 4.0e-39 164.9 89 84.3
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.3e-39 164.5 89 84.3
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 5.3e-39 164.5 88 83.0
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.3e-39 164.5 89 80.9
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.9e-39 164.1 89 83.1
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 6.9e-39 164.1 88 84.1
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 6.9e-39 164.1 88 85.2
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 9.0e-39 163.7 89 79.8
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.2e-38 163.3 83 88.0
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 1.5e-38 162.9 88 81.8
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.5e-38 162.9 89 84.3
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.5e-38 162.9 91 80.2
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 1.5e-38 162.9 89 84.3
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 1.5e-38 162.9 89 83.1
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 2.0e-38 162.5 91 78.0
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 3.4e-38 161.8 89 79.8
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 3.4e-38 161.8 89 83.1
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 4.5e-38 161.4 89 79.8
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 5.8e-38 161.0 89 80.9
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 5.8e-38 161.0 90 83.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 7.6e-38 160.6 92 78.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.3e-37 159.8 89 78.7
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.3e-37 159.8 90 82.2
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.3e-37 159.8 89 83.1
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.3e-37 159.8 89 80.9
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.2e-37 159.1 89 77.5
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 2.9e-37 158.7 89 77.5
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 3.8e-37 158.3 89 77.5
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 4.9e-37 157.9 89 77.5
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 6.4e-37 157.5 89 77.5
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 8.4e-37 157.1 89 77.5
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.1e-36 156.8 88 78.4
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.1e-36 156.8 89 77.5
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.1e-36 156.8 89 76.4
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.4e-36 155.6 89 75.3
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 3.2e-36 155.2 88 77.3
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 4.2e-36 154.8 89 77.5
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 5.5e-36 154.5 89 75.3
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 5.5e-36 154.5 89 75.3
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 7.1e-36 154.1 89 79.8
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 2.7e-35 152.1 78 87.2
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.5e-35 151.8 73 93.2
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.5e-35 151.8 89 76.4
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.8e-34 149.4 72 93.1
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.9e-34 148.3 72 91.7
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.9e-33 146.0 89 71.9
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 3.3e-33 145.2 128 57.8
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 5.6e-33 144.4 90 74.4
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.6e-32 142.9 90 73.3
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.1e-32 142.5 73 86.3
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 2.8e-32 142.1 72 88.9
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 4.8e-32 141.4 74 79.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.1e-31 140.2 72 88.9
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.4e-31 139.8 97 71.1
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.8e-31 139.4 69 88.4
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.5e-30 136.3 90 67.8
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.6e-30 135.6 72 84.7
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 5.8e-30 134.4 71 83.1
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 3.8e-29 131.7 72 79.2
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 4.2e-28 128.3 74 81.1
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 5.5e-28 127.9 83 67.5
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.3e-26 122.5 96 58.3
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 2.3e-26 122.5 91 60.4
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 1.6e-24 116.3 181 37.6
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 3.7e-24 115.2 55 92.7
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.4e-23 113.2 55 89.1
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 5.3e-23 111.3 55 89.1
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 9.0e-23 110.5 55 87.3
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 2.2e-21 105.9 57 82.5
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 7.2e-20 100.9 56 80.4
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-18 96.3 55 83.6
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 3.0e-18 95.5 44 88.6
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 4.5e-14 81.6 45 80.0
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.7e-11 72.4 37 83.8
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 5.1e-10 68.2 30 90.0
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 1.1e-09 67.0 32 84.4
MBI17_g19513_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.7e-08 63.2 76 40.8
MBI17_g19514_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 5.9e-06 54.7 73 39.7


User provided reference genes

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