Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 7.8e-45 183.3 87 100.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.7e-12 75.9 95 52.6
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.1e-09 66.6 88 45.5
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.8e-09 65.9 85 49.4
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.8e-09 65.9 43 65.1
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.8e-09 65.9 86 44.2
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.1e-09 65.1 85 43.5
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 4.0e-09 64.7 88 44.3
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 6.9e-09 63.9 46 60.9
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.9e-09 63.9 86 45.3
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.0e-09 63.5 87 43.7
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.0e-09 63.5 88 44.3
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.5e-08 62.8 83 39.8
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.0e-08 62.4 47 59.6
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.0e-08 62.4 51 54.9
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.6e-08 62.0 73 49.3
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 2.6e-08 62.0 55 54.5
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.4e-08 61.6 63 46.0
Prupe.2G019800 Prunus persica HOM05D003654 ORTHO05D048609 3.4e-08 61.6 88 48.9
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.4e-08 61.2 85 43.5
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.4e-08 61.2 93 38.7
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 7.6e-08 60.5 94 40.4
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.6e-08 60.5 63 46.0
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.6e-08 60.5 63 46.0
MD02G1307300 Malus domestica HOM05D003654 ORTHO05D048609 7.6e-08 60.5 40 67.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 7.6e-08 60.5 92 45.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 7.6e-08 60.5 85 43.5
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 9.9e-08 60.1 84 44.0
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-07 59.7 94 39.4
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-07 59.3 91 40.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.7e-07 59.3 49 59.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.7e-07 59.3 36 66.7
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-07 58.9 89 40.4
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-07 58.9 94 39.4
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.2e-07 58.9 94 39.4
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.2e-07 58.9 83 39.8
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.2e-07 58.9 93 40.9
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 2.2e-07 58.9 40 65.0
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 2.9e-07 58.5 77 41.6
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 3.8e-07 58.2 89 40.4
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.8e-07 58.2 91 40.7
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.8e-07 58.2 88 40.9
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.9e-07 57.8 69 46.4
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.9e-07 57.8 89 36.0
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.9e-07 57.8 82 41.5
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 4.9e-07 57.8 76 44.7
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.9e-07 57.8 64 43.8
RcHm_v2.0_Chr1g0317121 Rosa chinensis HOM05D021847 ORTHO05D025587 4.9e-07 57.8 87 40.2
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 4.9e-07 57.8 41 58.5
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 6.4e-07 57.4 91 38.5
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.4e-07 57.4 91 39.6
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 6.4e-07 57.4 64 48.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.1e-06 56.6 83 39.8
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.4e-06 56.2 30 73.3
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 1.4e-06 56.2 44 63.6
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.4e-06 56.2 84 40.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.4e-06 56.2 67 44.8
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.4e-06 56.2 31 71.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.9e-06 55.8 31 71.0
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.9e-06 55.8 49 55.1
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-06 55.5 84 40.5
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.4e-06 55.5 96 36.5
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.4e-06 55.5 96 36.5
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.4e-06 55.5 96 36.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 2.4e-06 55.5 93 38.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.4e-06 55.5 86 39.5
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.4e-06 55.5 55 54.5
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-06 55.5 31 71.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.4e-06 55.5 31 71.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.4e-06 55.5 40 57.5
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 3.2e-06 55.1 84 40.5
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 3.2e-06 55.1 86 39.5
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.2e-06 55.1 46 56.5
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.2e-06 55.1 85 42.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.2e-06 55.1 31 71.0
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 3.2e-06 55.1 44 56.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 4.2e-06 54.7 82 37.8
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 4.2e-06 54.7 39 56.4
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 4.2e-06 54.7 31 67.7
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 4.2e-06 54.7 31 67.7
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 4.2e-06 54.7 42 59.5
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 4.2e-06 54.7 42 59.5
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 62.9
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 4.2e-06 54.7 35 62.9
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 5.4e-06 54.3 83 38.6
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.4e-06 54.3 31 67.7
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.4e-06 54.3 31 67.7
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.4e-06 54.3 31 67.7
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.4e-06 54.3 31 71.0
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.4e-06 54.3 41 56.1
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.1e-06 53.9 50 50.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.1e-06 53.9 35 60.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 9.3e-06 53.5 55 47.3
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 9.3e-06 53.5 42 54.8
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 9.3e-06 53.5 86 43.0


User provided reference genes

Program Settings