Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 0.0e+00 1302.0 652 100.0
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 5.8e-270 934.1 679 72.5
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 1.5e-233 813.1 674 65.3
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 5.7e-217 758.1 674 62.3
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 9.8e-217 757.3 674 62.3
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 3.1e-194 682.6 683 58.1
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 1.7e-184 650.2 542 63.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 9.9e-177 624.4 706 52.4
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 2.5e-172 609.8 564 61.0
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.4e-170 604.0 664 54.5
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 3.1e-170 602.8 649 55.5
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 3.3e-164 582.8 712 49.3
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 6.9e-162 575.1 676 50.1
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 9.6e-156 554.7 676 48.4
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 6.2e-155 552.0 678 47.8
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.3e-152 544.3 660 48.2
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 1.6e-150 537.3 692 46.5
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 4.6e-150 535.8 676 48.7
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.8e-149 533.9 678 48.7
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.8e-147 526.6 687 45.9
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 2.4e-146 523.5 659 48.3
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.0e-145 520.4 659 48.3
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 3.4e-145 519.6 669 49.0
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 5.8e-145 518.8 707 45.8
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 1.3e-144 517.7 656 47.6
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 2.2e-144 516.9 731 44.9
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 2.2e-144 516.9 679 47.4
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 4.2e-143 512.7 674 47.2
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 1.2e-142 511.1 684 45.6
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 4.8e-139 499.2 669 48.1
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 5.3e-138 495.7 688 46.4
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 1.2e-137 494.6 694 45.4
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.9e-136 490.0 660 46.5
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 5.1e-133 479.2 408 62.0
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 2.2e-131 473.8 686 41.7
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 1.1e-130 471.5 687 44.4
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 5.3e-130 469.2 690 44.2
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 9.0e-130 468.4 471 51.8
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 1.0e-128 464.9 667 44.5
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 2.2e-128 463.8 683 42.2
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 1.1e-127 461.5 681 42.1
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.5e-124 451.1 687 42.2
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 2.0e-124 450.7 687 42.9
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 4.3e-124 449.5 683 42.6
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 7.4e-124 448.7 675 44.6
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 2.8e-123 446.8 665 43.2
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.4e-122 444.5 704 42.3
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 2.9e-120 436.8 669 41.7
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 7.2e-119 432.2 480 50.0
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 2.7e-118 430.3 684 40.8
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.4e-117 427.9 485 50.1
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 5.1e-117 426.0 679 40.1
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 1.3e-115 421.4 743 39.0
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 3.2e-111 406.8 660 41.8
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.2e-110 404.8 539 44.9
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 6.1e-110 402.5 673 40.3
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 3.1e-106 390.2 573 45.5
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 6.5e-104 382.5 654 37.6
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 1.1e-103 381.7 655 41.1
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 4.2e-103 379.8 655 38.8
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 3.7e-99 366.7 460 45.7
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.4e-98 364.0 461 48.6
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 1.6e-97 361.3 713 37.2
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 6.5e-96 355.9 646 38.7
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 1.1e-95 355.1 488 49.6
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 2.1e-94 350.9 650 36.9
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 1.8e-93 347.8 669 37.7
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 5.2e-93 346.3 651 37.0
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 2.2e-91 340.9 648 35.8
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 7.0e-90 335.9 694 35.3
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 7.0e-90 335.9 659 37.2
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 1.0e-88 332.0 757 34.6
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 3.3e-87 327.0 674 35.0
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 6.1e-86 322.8 672 39.6
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 3.0e-85 320.5 400 43.2
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 7.0e-82 309.3 547 38.6
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 7.0e-82 309.3 694 33.4
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 2.5e-79 300.8 542 38.4
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 3.3e-79 300.4 684 33.9
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 2.1e-78 297.7 320 52.8
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 7.5e-76 289.3 542 37.3
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 7.5e-76 289.3 676 33.0
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 9.8e-76 288.9 542 37.3
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 1.1e-74 285.4 313 51.8
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 4.6e-73 280.0 348 46.6
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 5.6e-71 273.1 257 55.6
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 3.1e-69 267.3 375 41.3
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 1.8e-61 241.5 420 39.3
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 1.8e-61 241.5 261 49.0
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 3.4e-60 237.3 308 43.5
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.4e-60 237.3 314 43.6
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 1.7e-59 235.0 356 44.4
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 1.0e-56 225.7 352 42.9
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 6.6e-56 223.0 202 59.4
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.9e-55 221.5 366 37.4
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 1.3e-48 198.7 365 35.3
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 4.3e-47 193.7 332 40.7
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 9.6e-47 192.6 366 38.0
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.1e-45 187.6 294 41.8
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 8.4e-43 179.5 373 35.4
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 9.3e-42 176.0 174 55.2
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 1.3e-40 172.2 373 34.9
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 2.0e-36 158.3 443 28.4
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 5.8e-36 156.8 191 44.5
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 4.2e-34 150.6 293 34.8
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 6.9e-29 133.3 135 51.1
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 8.4e-27 126.3 215 40.0
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.7e-19 102.1 251 33.5
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.7e-17 94.7 110 50.9
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 1.7e-11 75.5 197 36.5
TAR381G0879 Trochodendron aralioides HOM05D006715 ORTHO05D008345 1.7e-11 75.5 169 32.0
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 2.9e-11 74.7 189 36.5
Sc02g0003960 Simmondsia chinensis HOM05D006715 ORTHO05D008345 2.9e-11 74.7 112 47.3
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 2.1e-09 68.6 48 62.5
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 3.9e-08 64.3 328 25.0
SEGI_02927 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.5e-07 62.4 216 27.3


User provided reference genes

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