Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.2e-126 456.8 277 100.0
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.5e-105 386.7 274 86.5
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 8.6e-98 360.9 277 70.4
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.5e-97 360.1 277 71.1
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-97 359.4 277 69.7
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.8e-93 345.5 271 70.1
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.5e-89 333.6 277 66.1
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.5e-89 333.6 275 66.2
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 5.6e-89 331.6 277 65.7
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.8e-88 329.3 277 65.3
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.1e-87 327.4 265 68.7
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-87 327.0 195 85.6
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 6.9e-87 324.7 264 65.5
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 4.4e-86 322.0 277 63.5
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 7.1e-84 314.7 277 60.6
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 9.3e-84 314.3 265 63.8
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.2e-83 313.9 269 62.5
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.2e-83 313.9 277 61.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.6e-83 313.5 277 60.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 2.1e-83 313.2 277 61.4
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.1e-83 313.2 277 60.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.7e-83 312.8 277 60.6
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 6.0e-83 311.6 277 61.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.0e-82 310.8 265 62.3
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.3e-82 310.5 276 60.1
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 1.7e-82 310.1 267 64.0
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.7e-82 310.1 281 60.9
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 2.3e-82 309.7 275 61.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.3e-82 309.7 277 60.6
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 3.0e-82 309.3 277 60.6
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.0e-82 309.3 277 60.3
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 3.9e-82 308.9 277 60.6
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 6.6e-82 308.1 203 73.9
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 6.6e-82 308.1 264 61.7
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.1e-81 307.4 263 62.4
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.9e-81 306.6 264 62.9
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 3.3e-81 305.8 277 59.6
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.4e-81 304.7 276 61.6
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 7.4e-81 304.7 277 58.5
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 7.4e-81 304.7 277 59.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 9.6e-81 304.3 263 62.4
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 9.6e-81 304.3 264 62.5
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.3e-80 303.9 272 61.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.6e-80 303.5 277 58.8
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.6e-80 303.5 272 60.7
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 2.8e-80 302.8 203 75.9
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 4.8e-80 302.0 277 58.5
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 4.8e-80 302.0 277 59.2
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 6.2e-80 301.6 276 59.1
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 8.1e-80 301.2 203 72.4
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 8.1e-80 301.2 277 58.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.1e-79 300.8 203 75.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.4e-79 300.4 277 58.5
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 9.0e-79 297.7 277 58.5
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 2.6e-78 296.2 282 55.7
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 4.5e-78 295.4 276 58.0
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 5.8e-78 295.0 273 57.9
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 7.6e-78 294.7 265 58.9
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.7e-77 293.5 266 58.6
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.7e-77 293.5 280 57.5
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 2.2e-77 293.1 276 57.2
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 2.9e-77 292.7 265 57.4
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 2.9e-77 292.7 265 57.4
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 2.9e-77 292.7 266 58.6
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 3.8e-77 292.4 266 58.6
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.8e-77 292.4 266 58.6
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.8e-77 292.4 266 58.6
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 3.8e-77 292.4 266 58.6
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 4.9e-77 292.0 263 58.6
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.1e-76 290.8 279 57.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.9e-76 290.0 272 59.2
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 3.2e-76 289.3 260 64.2
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 5.5e-76 288.5 265 57.4
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 7.1e-76 288.1 277 56.3
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 7.1e-76 288.1 277 56.3
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.6e-75 287.0 277 56.7
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 2.1e-75 286.6 276 59.4
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.7e-75 286.2 261 59.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 3.5e-75 285.8 265 56.6
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.0e-74 284.3 277 55.2
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 5.1e-74 282.0 197 69.5
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.1e-73 280.8 279 56.3
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.1e-73 280.8 275 56.0
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 5.6e-73 278.5 266 57.5
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.6e-73 278.5 262 58.8
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.6e-72 276.9 278 55.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.1e-72 276.6 275 52.7
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 8.1e-72 274.6 276 54.3
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 9.0e-71 271.2 264 56.8
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.7e-69 266.9 203 65.5
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 2.9e-69 266.2 246 58.5
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.8e-66 256.9 206 62.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 1.1e-63 247.7 274 52.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.9e-61 239.6 221 63.3
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 5.0e-61 238.8 151 75.5
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 8.5e-61 238.0 203 59.1
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 3.9e-58 229.2 139 82.7
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 5.3e-55 218.8 128 85.2
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 3.8e-53 212.6 223 55.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 3.8e-53 212.6 203 51.2
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 7.2e-52 208.4 203 53.7
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 5.1e-50 202.2 153 64.1
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 1.9e-44 183.7 265 43.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.2e-44 182.6 265 44.2
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.0e-42 176.4 199 50.8
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.8e-40 169.9 207 47.3
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.9e-36 157.1 240 39.6
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.5e-36 156.8 175 53.1
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 8.8e-34 148.3 276 37.7
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-31 141.0 80 85.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 9.1e-31 138.3 179 44.1
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 4.5e-30 136.0 277 36.1
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 5.9e-30 135.6 110 68.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.1e-28 131.3 202 39.6
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-18 97.8 66 77.3
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 1.8e-18 97.4 248 32.7
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.6e-14 84.3 50 84.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.5e-14 83.2 127 40.2
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 6.1e-11 72.4 110 43.6
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 4.4e-09 66.2 101 44.6
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 8.3e-08 62.0 47 55.3
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 3.2e-07 60.1 39 66.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.4e-07 59.3 112 32.1


User provided reference genes

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