Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 4.8e-42 174.1 88 100.0
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.3e-23 112.8 93 72.0
RcHm_v2.0_Chr6g0276561 Rosa chinensis HOM05D019963 ORTHO05D004852 2.2e-15 85.5 99 55.6
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.9e-13 77.0 90 54.4
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.8e-12 75.9 89 52.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.0e-11 72.4 90 55.6
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.0e-11 72.4 82 54.9
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.5e-11 72.0 78 53.8
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 7.4e-11 70.5 84 50.0
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-10 69.7 88 48.9
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.7e-10 69.3 85 50.6
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.2e-10 68.9 73 54.8
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.8e-10 68.6 82 56.1
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 3.7e-10 68.2 66 59.1
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 6.3e-10 67.4 73 54.8
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 8.2e-10 67.0 89 52.8
FvH4_2g14270 Fragaria vesca HOM05D019963 ORTHO05D004852 1.4e-09 66.2 35 85.7
FAN15G2004 Fragaria x ananassa HOM05D019963 ORTHO05D004852 1.4e-09 66.2 35 85.7
FAN24G1587 Fragaria x ananassa HOM05D019963 ORTHO05D004852 1.4e-09 66.2 35 85.7
FAN27G0078 Fragaria x ananassa HOM05D019963 ORTHO05D004852 1.4e-09 66.2 35 85.7
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.8e-09 65.9 88 48.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.1e-09 65.1 81 51.9
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 5.3e-09 64.3 82 48.8
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.2e-08 63.2 90 44.4
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-08 63.2 75 54.7
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.5e-08 62.8 82 50.0
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 1.5e-08 62.8 70 52.9
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 2.6e-08 62.0 73 50.7
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.5e-08 61.2 88 46.6
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 5.9e-08 60.8 67 52.2
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.7e-08 60.5 65 52.3
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.7e-08 60.5 72 50.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.3e-07 59.7 67 52.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.3e-07 59.7 78 42.3
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-07 59.7 71 45.1
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.7e-07 59.3 68 50.0
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 2.2e-07 58.9 72 50.0
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-07 58.9 76 48.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 2.9e-07 58.5 75 48.0
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-07 58.2 79 46.8
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-07 58.2 77 41.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-07 58.2 79 46.8
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 3.8e-07 58.2 79 46.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 3.8e-07 58.2 77 41.6
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.8e-07 58.2 71 50.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.8e-07 58.2 71 50.7
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 6.5e-07 57.4 71 53.5
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-07 57.0 78 41.0
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 8.5e-07 57.0 77 41.6
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 8.5e-07 57.0 79 45.6
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 8.5e-07 57.0 77 41.6
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 8.5e-07 57.0 79 45.6
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 8.5e-07 57.0 65 50.8
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-06 56.6 71 49.3
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-06 56.6 78 44.9
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-06 56.6 71 47.9
Sp5g32080 Schrenkiella parvula HOM05D010542 ORTHO05D012589 1.1e-06 56.6 88 40.9
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-06 56.2 77 41.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-06 56.2 75 49.3
BcaC08g47196 Brassica carinata HOM05D010542 ORTHO05D012589 2.5e-06 55.5 94 41.5
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.5e-06 55.5 72 52.8
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.5e-06 55.5 71 47.9
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.2e-06 55.1 78 42.3
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-06 55.1 77 40.3
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 3.2e-06 55.1 77 40.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 3.2e-06 55.1 64 50.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.2e-06 55.1 71 46.5
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 3.2e-06 55.1 82 42.7
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.2e-06 54.7 77 40.3
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.2e-06 54.7 77 40.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.2e-06 54.7 77 40.3
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.2e-06 54.7 77 41.6
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 5.5e-06 54.3 71 40.8
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.2e-06 53.9 76 40.8
Thhalv10019319m.g Eutrema salsugineum HOM05D010542 ORTHO05D012589 7.2e-06 53.9 96 40.6
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 7.2e-06 53.9 66 47.0
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 9.4e-06 53.5 76 46.1
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 9.4e-06 53.5 76 46.1
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 9.4e-06 53.5 76 46.1
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 9.4e-06 53.5 82 42.7


User provided reference genes

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