Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 8.5e-145 516.9 251 100.0
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 3.4e-125 451.8 247 89.9
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 4.0e-110 401.7 248 81.0
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 1.3e-108 396.7 248 80.6
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 2.2e-108 396.0 252 77.8
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 8.3e-108 394.0 247 78.1
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.9e-107 392.9 215 84.7
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 2.4e-107 392.5 246 77.2
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 2.4e-107 392.5 235 80.0
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 4.1e-107 391.7 244 77.9
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.2e-106 390.2 215 84.7
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 7.8e-106 387.5 236 79.2
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.0e-105 387.1 246 79.7
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 3.0e-105 385.6 251 75.3
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 5.1e-105 384.8 252 75.0
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 1.9e-104 382.9 243 75.7
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.9e-104 382.9 222 81.5
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 3.3e-104 382.1 212 83.5
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 5.6e-104 381.3 251 74.5
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 7.3e-104 380.9 217 81.6
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 9.6e-104 380.6 254 75.6
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 9.6e-104 380.6 254 74.8
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 1.6e-103 379.8 248 76.2
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 2.1e-103 379.4 251 74.1
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 2.8e-103 379.0 213 83.1
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 3.6e-103 378.6 248 74.6
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 4.7e-103 378.3 246 76.0
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 1.1e-102 377.1 245 75.5
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 1.8e-102 376.3 219 79.9
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 4.4e-101 371.7 219 78.5
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 5.8e-101 371.3 218 81.7
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 5.8e-101 371.3 238 75.6
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 5.8e-101 371.3 213 81.7
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 9.9e-101 370.5 287 67.6
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 2.2e-100 369.4 244 74.2
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 2.2e-100 369.4 252 74.2
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 2.9e-100 369.0 223 78.9
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 4.9e-100 368.2 253 72.3
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 6.4e-100 367.9 195 85.6
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 2.4e-99 365.9 225 76.4
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 3.2e-99 365.5 221 77.8
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 9.3e-99 364.0 219 79.5
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 1.2e-98 363.6 248 72.2
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.6e-98 363.2 244 73.8
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 2.1e-98 362.8 213 79.3
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 3.5e-98 362.1 237 75.9
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 4.6e-98 361.7 217 81.1
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 4.6e-98 361.7 198 84.3
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 3.0e-97 359.0 228 73.7
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 3.9e-97 358.6 252 69.8
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 8.7e-97 357.5 234 73.1
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 2.5e-96 355.9 214 78.0
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 4.3e-96 355.1 220 76.4
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 7.3e-96 354.4 239 72.4
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.3e-95 353.6 197 83.2
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 2.8e-95 352.4 248 72.2
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 3.6e-95 352.1 214 78.0
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 3.6e-95 352.1 249 71.1
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 4.8e-95 351.7 198 81.3
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 6.2e-95 351.3 237 71.3
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 8.1e-95 350.9 256 70.7
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 8.1e-95 350.9 195 84.1
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 2.4e-94 349.4 237 70.9
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 3.1e-94 349.0 211 77.3
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 3.1e-94 349.0 195 82.6
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 4.0e-94 348.6 216 74.5
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 1.2e-93 347.1 193 84.5
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 2.6e-93 345.9 253 67.2
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 4.4e-93 345.1 198 80.8
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 1.7e-92 343.2 215 76.7
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 2.2e-92 342.8 207 76.8
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 3.8e-92 342.0 256 67.6
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.1e-91 340.5 243 72.8
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 5.4e-91 338.2 193 79.8
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 9.3e-91 337.4 210 77.1
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 3.5e-90 335.5 204 78.4
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 3.3e-88 328.9 228 70.2
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 5.6e-88 328.2 247 64.4
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 1.8e-86 323.2 254 65.4
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 4.0e-86 322.0 191 77.5
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 1.5e-85 320.1 243 67.9
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 7.6e-85 317.8 239 66.9
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 9.9e-85 317.4 207 75.4
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.9e-80 303.1 197 74.6
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 3.3e-80 302.4 187 72.7
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 2.6e-77 292.7 202 70.8
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 1.3e-76 290.4 195 67.2
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 2.5e-75 286.2 192 67.2
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 2.5e-75 286.2 169 79.9
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 2.7e-74 282.7 206 68.0
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 9.6e-72 274.2 183 68.9
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 9.6e-72 274.2 175 68.0
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 3.1e-70 269.2 199 65.3
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 5.5e-67 258.5 242 61.6
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.6e-66 256.9 254 55.5
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 2.7e-66 256.1 136 86.0
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 3.5e-66 255.8 242 61.6
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 4.3e-64 248.8 148 76.4
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.5e-56 223.0 173 60.7
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 2.2e-55 219.9 137 76.6
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 1.8e-54 216.9 210 54.3
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 2.9e-52 209.5 201 51.2
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 3.7e-47 192.6 123 74.8
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 8.2e-47 191.4 200 53.0
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 3.0e-41 172.9 103 73.8
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 5.2e-41 172.2 153 51.6
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 8.8e-41 171.4 105 77.1
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 8.5e-28 128.3 222 39.2
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 1.2e-26 124.4 71 83.1
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 8.0e-26 121.7 70 77.1
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 3.0e-17 93.2 67 65.7


User provided reference genes

Program Settings