Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 3.7e-106 388.7 263 100.0
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 7.0e-73 278.1 176 80.7
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.5e-54 214.5 143 75.5
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.5e-51 207.2 154 70.1
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.5e-51 207.2 154 70.1
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.1e-49 201.1 154 68.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.7e-48 196.4 156 65.4
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 8.6e-47 191.4 155 67.1
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 2.9e-34 149.8 170 46.5
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 2.7e-32 143.3 136 53.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.5e-32 142.9 115 64.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.7e-31 140.6 115 63.5
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 3.9e-31 139.4 148 52.7
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 1.2e-29 134.4 171 46.8
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 3.1e-28 129.8 164 48.8
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 5.2e-28 129.0 204 38.7
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 9.0e-28 128.3 159 45.3
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 7.6e-27 125.2 97 61.9
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 6.4e-26 122.1 115 50.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 2.4e-25 120.2 104 57.7
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 5.4e-25 119.0 107 57.0
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.2e-24 117.9 94 55.3
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 4.6e-24 115.9 97 62.9
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 6.0e-24 115.5 91 63.7
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 2.3e-23 113.6 97 57.7
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 3.0e-23 113.2 107 54.2
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 3.0e-23 113.2 98 55.1
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 6.6e-23 112.1 89 64.0
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.5e-22 110.2 117 53.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.5e-22 110.2 121 47.9
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 3.3e-22 109.8 100 58.0
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 7.3e-22 108.6 97 54.6
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.3e-21 107.8 92 57.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.6e-21 107.5 101 53.5
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.6e-21 107.5 83 60.2
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.6e-21 107.5 83 60.2
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 3.6e-21 106.3 93 58.1
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 4.8e-21 105.9 122 45.1
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 6.2e-21 105.5 101 50.5
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 6.2e-21 105.5 101 50.5
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 6.2e-21 105.5 122 46.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 1.4e-20 104.4 101 50.5
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 1.4e-20 104.4 94 58.5
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.8e-20 104.0 93 58.1
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.8e-20 104.0 88 58.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.4e-20 103.6 88 56.8
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 3.1e-20 103.2 110 50.9
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 4.0e-20 102.8 87 54.0
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 4.0e-20 102.8 89 56.2
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 4.0e-20 102.8 96 55.2
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 9.0e-20 101.7 98 58.2
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 1.2e-19 101.3 103 47.6
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 7.6e-19 98.6 105 48.6
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 9.9e-19 98.2 109 45.9
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 9.9e-19 98.2 76 61.8
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.3e-18 97.8 89 58.4
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.2e-18 97.1 97 45.4
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 2.9e-18 96.7 77 58.4
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.8e-18 96.3 98 48.0
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 8.4e-18 95.1 84 54.8
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 1.1e-17 94.7 74 60.8
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.2e-17 93.2 77 55.8
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 5.4e-17 92.4 87 50.6
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.4e-17 92.4 97 46.4
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 5.4e-17 92.4 116 45.7
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 5.4e-17 92.4 97 53.6
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.4e-17 92.4 88 50.0
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 7.1e-17 92.0 87 49.4
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 9.3e-17 91.7 102 48.0
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.2e-16 91.3 87 51.7
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.2e-16 91.3 72 61.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.2e-16 91.3 98 45.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.2e-16 91.3 107 44.9
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.6e-16 90.9 81 56.8
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.6e-16 90.9 86 53.5
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 2.7e-16 90.1 122 41.0
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.5e-16 89.7 81 53.1
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.3e-15 87.8 93 51.6
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 1.8e-15 87.4 68 63.2
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 1.8e-15 87.4 71 60.6
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.3e-15 87.0 86 50.0
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.0e-15 86.7 123 42.3
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.7e-15 85.5 102 49.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.1e-14 84.7 95 48.4
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 1.1e-14 84.7 73 54.8
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.5e-14 84.3 94 47.9
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.9e-14 84.0 82 51.2
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.9e-14 84.0 107 45.8
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.9e-14 84.0 69 55.1
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 3.3e-14 83.2 76 48.7
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 3.3e-14 83.2 57 59.6
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 4.3e-14 82.8 87 48.3
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 5.6e-14 82.4 89 47.2
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.6e-14 82.4 88 47.7
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 7.4e-14 82.0 77 55.8
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.6e-14 81.6 91 45.1
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 9.6e-14 81.6 93 47.3
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 2.8e-13 80.1 87 44.8
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.8e-13 80.1 52 63.5
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 4.8e-13 79.3 62 61.3
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 4.8e-13 79.3 86 46.5
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 4.8e-13 79.3 150 32.0
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.4e-12 77.8 87 49.4
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.4e-12 77.0 59 61.0
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 3.1e-12 76.6 73 49.3
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.0e-12 76.3 83 45.8
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 4.0e-12 76.3 66 53.0
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 4.0e-12 76.3 59 57.6
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 5.3e-12 75.9 101 43.6
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 6.9e-12 75.5 98 44.9
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.9e-12 75.5 50 66.0
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.9e-12 75.5 59 54.2
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 6.9e-12 75.5 59 54.2
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 9.0e-12 75.1 70 50.0
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 9.0e-12 75.1 79 45.6
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.2e-11 74.7 62 53.2
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 1.5e-11 74.3 64 59.4
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.0e-11 73.9 117 38.5
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 9.9e-11 71.6 57 56.1
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.3e-10 71.2 91 45.1
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 2.2e-10 70.5 72 45.8
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.9e-10 70.1 72 48.6
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.9e-10 70.1 91 41.8
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 2.9e-10 70.1 66 56.1
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.9e-10 69.3 93 41.9
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 6.4e-10 68.9 46 67.4
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 6.4e-10 68.9 74 43.2
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.4e-09 67.8 59 52.5
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.4e-09 67.8 51 56.9
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-09 67.8 46 63.0
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 2.4e-09 67.0 63 47.6
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.4e-09 67.0 90 40.0
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 2.4e-09 67.0 64 48.4
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 3.2e-09 66.6 112 39.3
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 4.2e-09 66.2 95 38.9
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 4.2e-09 66.2 89 44.9
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 4.2e-09 66.2 112 38.4
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.5e-09 65.9 106 41.5
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 7.1e-09 65.5 60 50.0
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.1e-09 65.5 105 42.9
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 9.3e-09 65.1 64 48.4
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 9.3e-09 65.1 110 39.1
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 9.3e-09 65.1 94 35.1
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 9.3e-09 65.1 93 40.9
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 1.2e-08 64.7 75 44.0
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.2e-08 64.7 50 56.0
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.6e-08 64.3 71 47.9
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.6e-08 64.3 79 39.2
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 2.1e-08 63.9 90 38.9
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.7e-08 63.5 64 48.4
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 7.9e-08 62.0 113 31.9
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 7.9e-08 62.0 84 44.0
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 7.9e-08 62.0 50 56.0
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 7.9e-08 62.0 75 42.7
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.0e-07 61.6 64 45.3
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.3e-07 61.2 105 32.4
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 1.3e-07 61.2 91 42.9
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 1.8e-07 60.8 39 66.7
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 2.3e-07 60.5 50 52.0
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 5.1e-07 59.3 57 43.9
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 6.7e-07 58.9 37 64.9
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.7e-07 58.9 51 49.0
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 8.7e-07 58.5 64 42.2
SGA_v2.0_scaffold25G11158 Striga asiatica HOM05D003899 ORTHO05D003655 8.7e-07 58.5 97 42.3
CAN.G833.1 Capsicum annuum HOM05D003899 ORTHO05D003655 1.1e-06 58.2 58 44.8
Duzib147G0063 Durio zibethinus HOM05D003899 ORTHO05D003655 1.1e-06 58.2 96 38.5
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.1e-06 58.2 53 50.9
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.9e-06 57.4 70 40.0
PGR042G3889 Punica granatum HOM05D009119 ORTHO05D003655 7.4e-06 55.5 68 42.6
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 7.4e-06 55.5 88 38.6


User provided reference genes

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