Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.6e-158 562.8 304 100.0
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.3e-152 542.3 304 93.8
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.8e-149 532.7 297 97.6
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.7e-145 518.8 293 96.2
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 6.1e-145 517.7 293 96.2
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.4e-144 516.5 293 93.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-136 490.0 281 96.1
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 4.5e-132 474.9 304 82.6
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.5e-132 474.9 281 94.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 6.5e-131 471.1 304 81.6
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 7.2e-130 467.6 304 81.2
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 1.6e-129 466.5 304 80.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 5.2e-128 461.5 304 79.9
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.1e-127 460.3 304 80.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.5e-127 459.9 304 80.6
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 5.7e-127 458.0 304 79.6
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.7e-126 456.4 304 79.9
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 4.8e-126 454.9 303 80.2
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 4.8e-126 454.9 303 80.2
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 6.3e-126 454.5 295 82.4
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.2e-126 454.1 304 78.9
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.8e-125 453.0 295 84.1
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 2.4e-125 452.6 294 84.0
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.5e-124 448.7 304 78.0
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.5e-123 444.1 304 78.0
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.2e-121 440.3 304 77.3
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.1e-121 439.5 295 80.0
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.6e-121 438.7 295 79.0
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 6.1e-121 438.0 295 79.7
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 8.0e-121 437.6 290 80.0
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 8.0e-121 437.6 295 80.0
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.8e-120 436.4 304 76.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 3.0e-120 435.6 295 78.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 77.6
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 6.8e-120 434.5 295 79.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 8.8e-120 434.1 290 78.6
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.2e-119 433.7 290 78.6
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 2.0e-119 433.0 305 77.0
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.4e-119 432.2 304 76.3
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 9.7e-119 430.6 290 78.3
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.8e-118 428.3 305 76.7
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 6.3e-118 427.9 295 77.3
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 8.3e-118 427.6 304 74.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 75.0
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-117 426.8 295 78.3
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 3.1e-117 425.6 295 74.9
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 5.3e-117 424.9 304 74.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 5.3e-117 424.9 300 75.3
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 5.3e-117 424.9 304 74.3
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 2.0e-116 422.9 305 76.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.7e-116 422.5 305 78.7
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.5e-116 422.2 293 78.2
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 4.5e-116 421.8 295 79.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 5.9e-116 421.4 295 78.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 7.7e-116 421.0 304 74.0
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.8e-115 418.7 293 76.5
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.0e-115 418.3 304 73.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 5.0e-115 418.3 304 73.4
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.5e-114 416.8 292 76.7
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.5e-114 416.8 304 72.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.5e-114 416.8 304 75.7
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.9e-114 416.4 296 76.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.9e-114 416.4 304 73.0
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 3.2e-114 415.6 304 71.7
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 5.5e-114 414.8 308 75.6
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 7.2e-114 414.5 304 71.4
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 9.4e-114 414.1 304 71.1
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 9.4e-114 414.1 304 72.4
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.1e-113 412.9 293 78.2
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.7e-113 412.5 292 78.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.6e-113 412.1 293 75.8
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 70.7
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 70.7
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 70.7
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.4e-112 410.2 293 76.5
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.4e-112 410.2 293 76.5
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.8e-112 409.8 295 74.9
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 3.0e-112 409.1 304 72.4
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 4.0e-112 408.7 295 73.6
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 4.0e-112 408.7 293 77.5
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 4.0e-112 408.7 304 73.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 4.4e-111 405.2 293 78.2
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 5.7e-111 404.8 304 70.1
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 9.8e-111 404.1 306 72.9
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 4.8e-110 401.7 293 76.8
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 6.3e-110 401.4 295 72.2
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.1e-109 397.5 295 73.6
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.0e-108 396.4 293 71.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.8e-107 392.1 281 74.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.1e-106 390.6 281 75.4
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 4.2e-106 388.7 292 71.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 1.8e-104 383.3 292 68.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 2.3e-104 382.9 300 68.0
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 5.2e-104 381.7 291 71.1
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.0e-103 379.8 290 69.7
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 7.5e-103 377.9 298 68.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 2.8e-102 375.9 295 69.8
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 3.7e-102 375.6 305 66.6
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 4.9e-102 375.2 300 66.3
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.2e-100 370.5 296 67.9
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 5.0e-99 365.2 295 64.7
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.9e-98 363.2 302 62.3
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 5.8e-95 351.7 281 66.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.9e-94 349.4 195 95.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.9e-93 346.7 290 63.1
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 5.0e-91 338.6 273 67.8
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.5e-90 337.0 272 67.3
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.8e-80 303.5 227 74.4
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 9.2e-77 291.2 295 59.0
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 8.6e-75 284.6 306 53.9
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.1e-73 280.0 195 78.5
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.3e-65 254.2 163 80.4
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 8.1e-65 251.5 159 86.2
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 9.0e-64 248.1 291 52.6
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 7.6e-63 245.0 295 49.8
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 4.2e-61 239.2 195 69.2
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.3e-58 229.2 194 60.8
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 9.0e-56 221.5 338 43.5
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 6.7e-51 205.3 292 46.2
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.5e-50 204.1 139 78.4
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.3e-46 191.0 131 74.8
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 3.2e-45 186.4 235 53.6
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-41 174.1 97 95.9
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 1.2e-39 167.9 206 50.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 8.4e-38 161.8 186 55.4
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.1e-36 157.1 115 78.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 6.7e-35 152.1 102 77.5
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.5e-34 150.2 98 74.5
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.4e-32 144.4 169 50.9
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.5e-30 135.6 180 42.8
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.4e-18 96.3 86 64.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.4e-18 96.3 282 30.5
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 3.1e-16 90.1 303 30.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 4.1e-16 89.7 43 90.7
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 9.1e-16 88.6 57 73.7
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 9.1e-16 88.6 52 75.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 4.5e-15 86.3 71 74.6
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 6.1e-12 75.9 150 39.3
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.2e-11 72.8 172 32.0
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-08 65.1 195 30.3


User provided reference genes

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