Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 2.2e-118 429.1 241 100.0
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 1.4e-112 409.8 241 96.3
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.4e-106 388.7 241 93.4
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.4e-91 340.1 241 79.3
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 7.5e-90 334.3 243 78.2
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 1.1e-88 330.5 241 78.0
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 2.1e-84 316.2 244 76.2
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 2.3e-83 312.8 242 76.9
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 8.9e-83 310.8 244 79.1
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 4.9e-81 305.1 252 71.8
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.1e-79 299.7 244 74.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 4.6e-79 298.5 241 74.7
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 3.9e-78 295.4 245 71.0
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.5e-77 292.7 243 72.4
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.3e-77 292.4 241 72.6
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 7.3e-77 291.2 241 71.8
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.2e-76 290.4 250 68.4
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.2e-76 290.4 248 69.0
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.1e-76 289.7 241 71.4
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 6.2e-76 288.1 246 70.7
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 8.9e-75 284.3 239 71.5
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 1.2e-74 283.9 244 72.5
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.5e-74 283.5 250 66.8
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 1.5e-74 283.5 242 71.9
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.6e-74 282.7 240 70.4
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.4e-74 282.0 244 72.1
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 5.8e-74 281.6 243 70.8
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.3e-73 280.4 246 68.7
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 1.7e-73 280.0 246 65.9
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 2.9e-73 279.3 242 72.7
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 4.9e-73 278.5 241 71.8
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 4.2e-72 275.4 241 71.8
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 5.4e-72 275.0 245 68.6
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 5.4e-72 275.0 238 70.2
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 4.6e-71 271.9 241 70.5
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 4.6e-71 271.9 245 66.5
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 1.0e-70 270.8 250 64.8
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.3e-70 270.4 239 70.3
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 8.7e-70 267.7 243 69.1
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.5e-69 266.9 244 70.5
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.6e-68 262.3 236 73.3
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 1.8e-67 260.0 243 65.0
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 3.1e-67 259.2 244 66.0
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.2e-66 257.3 244 68.4
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 2.6e-66 256.1 243 63.4
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 2.6e-66 256.1 243 64.2
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 3.4e-66 255.8 233 67.4
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 7.6e-66 254.6 243 63.0
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 9.9e-66 254.2 244 65.2
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 9.9e-66 254.2 245 62.4
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 2.2e-65 253.1 245 63.3
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.9e-64 250.0 245 66.5
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 1.2e-63 247.3 243 60.1
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 2.1e-63 246.5 243 63.4
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.1e-63 246.5 249 65.1
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 2.7e-63 246.1 245 64.5
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 7.9e-63 244.6 248 68.1
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 1.0e-62 244.2 246 64.6
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.7e-62 243.4 249 63.5
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 2.3e-62 243.0 241 62.7
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 2.3e-62 243.0 249 59.4
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 2.3e-62 243.0 244 61.1
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 8.7e-62 241.1 246 63.0
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 3.3e-61 239.2 239 62.3
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 2.8e-60 236.1 251 59.4
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 4.0e-59 232.3 239 61.5
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 9.0e-59 231.1 229 64.2
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.5e-58 230.3 227 64.3
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 3.4e-58 229.2 242 61.6
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.3e-57 227.3 165 81.8
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.7e-57 226.9 238 61.3
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 1.7e-57 226.9 243 61.7
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 2.2e-57 226.5 251 55.8
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 7.1e-56 221.5 234 62.4
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 1.2e-55 220.7 241 59.8
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 2.7e-55 219.5 246 58.9
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 2.7e-55 219.5 246 61.8
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 6.0e-55 218.4 240 59.2
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 6.0e-55 218.4 244 59.4
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 1.5e-53 213.8 226 61.1
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 5.6e-53 211.8 242 59.1
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 7.4e-53 211.5 246 60.6
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 4.8e-52 208.8 143 82.5
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 4.8e-52 208.8 244 56.6
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 8.1e-52 208.0 247 56.7
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.4e-51 207.2 281 51.6
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 6.9e-51 204.9 244 53.3
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 6.9e-51 204.9 243 56.4
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 7.6e-50 201.4 251 57.0
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.0e-49 201.1 143 80.4
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 2.2e-49 199.9 275 52.4
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 4.9e-49 198.7 241 55.6
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 4.9e-49 198.7 254 53.5
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 8.4e-49 198.0 243 56.0
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 8.4e-49 198.0 260 52.7
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 1.1e-48 197.6 243 55.1
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.4e-48 197.2 240 55.0
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 1.9e-48 196.8 246 54.9
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 2.5e-48 196.4 251 54.2
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 7.1e-48 194.9 344 44.5
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 1.2e-47 194.1 246 54.5
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 1.2e-47 194.1 180 63.9
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 2.1e-47 193.4 244 49.6
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 3.5e-47 192.6 238 52.5
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 3.5e-47 192.6 240 55.4
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 3.5e-47 192.6 239 55.6
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 6.0e-47 191.8 244 49.2
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 7.9e-47 191.4 240 54.6
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.3e-46 190.7 213 59.2
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.8e-46 190.3 242 53.7
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 2.3e-46 189.9 143 72.0
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.3e-46 189.9 233 59.2
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 3.0e-46 189.5 142 71.8
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 3.0e-46 189.5 143 72.0
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-46 189.5 143 72.7
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-46 189.5 142 71.8
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 3.0e-46 189.5 143 72.0
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 3.0e-46 189.5 142 71.8
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 3.0e-46 189.5 143 72.0
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 3.9e-46 189.1 238 56.7
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 5.1e-46 188.7 241 53.9
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 5.1e-46 188.7 143 72.0
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 8.7e-46 188.0 143 71.3
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 5.7e-45 185.3 238 50.8
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 5.7e-45 185.3 180 62.2
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 5.7e-45 185.3 271 49.8
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 9.6e-45 184.5 243 52.7
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.3e-44 184.1 231 54.5
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.8e-44 183.0 242 55.4
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 3.7e-44 182.6 148 75.0
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 4.8e-44 182.2 245 55.1
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 4.8e-44 182.2 245 55.1
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.4e-43 180.6 263 49.0
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.8e-43 180.3 234 49.6
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.8e-43 180.3 187 62.6
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 2.4e-43 179.9 264 50.4
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 4.1e-43 179.1 239 52.7
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 4.1e-43 179.1 248 53.2
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.2e-42 177.6 189 59.3
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.2e-42 177.6 179 60.9
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 1.2e-42 177.6 250 48.4
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.5e-42 177.2 242 52.5
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 1.0e-41 174.5 244 52.5
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.3e-41 174.1 143 65.0
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 3.2e-40 169.5 172 61.6
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 4.2e-40 169.1 192 58.9
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 2.7e-39 166.4 190 60.5
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 1.0e-38 164.5 196 54.1
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 1.8e-38 163.7 243 51.9
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 3.0e-38 162.9 190 56.8
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 1.1e-37 161.0 240 45.8
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-37 160.6 229 51.5
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 9.4e-32 141.4 181 53.6
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 5.1e-30 135.6 143 51.7
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.4e-29 132.5 225 44.9
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 9.7e-29 131.3 71 91.5
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.2e-28 130.2 66 97.0
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.7e-28 129.4 169 58.0
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.8e-28 129.0 145 57.9
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 3.1e-27 126.3 162 45.1
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 3.4e-26 122.9 87 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.0e-25 121.3 181 50.8
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 2.5e-24 116.7 150 44.7
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 9.4e-24 114.8 138 52.2
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 2.1e-23 113.6 92 69.6
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 3.6e-23 112.8 174 45.4
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 5.2e-22 109.0 242 40.1
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 5.2e-22 109.0 65 84.6
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-21 107.5 92 66.3
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.3e-21 106.3 202 38.6
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 5.7e-21 105.5 174 54.0
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 6.3e-20 102.1 182 42.3
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 1.7e-17 94.0 149 51.0
QL03p061482 Quercus lobata HOM05D003422 ORTHO05D034179 2.2e-17 93.6 175 46.3
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 2.5e-16 90.1 144 43.8
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 6.1e-15 85.5 78 62.8
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.3e-14 83.6 68 67.6
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 6.7e-14 82.0 70 65.7
Haze_19277 Corylus avellana HOM05D003422 ORTHO05D034179 1.2e-13 81.3 80 63.8
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 6.3e-12 75.5 68 63.2
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 7.7e-10 68.6 112 45.5
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 1.7e-09 67.4 63 63.5
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 2.1e-07 60.5 33 90.9
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 8.0e-07 58.5 27 92.6
Actinidia37435 Actinidia chinensis HOM05D000669 ORTHO05D000679 1.8e-06 57.4 67 56.7
C01p42710 Brassica napus HOM05D003422 ORTHO05D028074 3.0e-06 56.6 95 49.5
BolC1t04226H Brassica oleracea HOM05D003422 ORTHO05D028074 3.0e-06 56.6 95 49.5
Medtr1g048860 Medicago truncatula HOM05D003422 ORTHO05D004263 3.0e-06 56.6 143 41.3


User provided reference genes

Program Settings