Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G009100 Prunus persica HOM05D007049 ORTHO05D008896 5.0e-42 174.1 92 100.0
Prupe.8G009200 Prunus persica HOM05D007049 ORTHO05D008896 5.7e-30 134.0 91 83.5
Prupe.8G008400 Prunus persica HOM05D007049 ORTHO05D008896 1.4e-28 129.4 91 81.3
MD10G1006000 Malus domestica HOM05D007049 ORTHO05D008896 1.5e-25 119.4 91 74.7
FAN18G1167 Fragaria x ananassa HOM05D007049 ORTHO05D008896 3.6e-24 114.8 91 70.3
FAN18G2563 Fragaria x ananassa HOM05D007049 ORTHO05D008896 3.6e-24 114.8 91 70.3
RcHm_v2.0_Chr7g0212661 Rosa chinensis HOM05D007049 ORTHO05D008896 5.2e-23 110.9 90 67.8
RcHm_v2.0_Chr7g0212551 Rosa chinensis HOM05D007049 ORTHO05D008896 2.6e-22 108.6 90 68.9
QL04p010524 Quercus lobata HOM05D007049 ORTHO05D008896 7.5e-22 107.1 88 67.0
Sabra01G0012500 Salix brachista HOM05D007049 ORTHO05D008896 1.7e-21 105.9 91 62.6
FAN04G0010 Fragaria x ananassa HOM05D007049 ORTHO05D008896 6.3e-21 104.0 83 68.7
CiPaw.15G066500 Carya illinoinensis HOM05D007049 ORTHO05D008896 1.4e-20 102.8 88 62.5
Duzib177G1207 Durio zibethinus HOM05D007049 ORTHO05D008896 2.4e-20 102.1 87 64.4
RcHm_v2.0_Chr7g0212501 Rosa chinensis HOM05D007049 ORTHO05D008896 2.4e-20 102.1 84 67.9
TAR624G0348 Trochodendron aralioides HOM05D007049 ORTHO05D008896 2.4e-20 102.1 88 64.8
Peaxi162Scf00078g00061 Petunia axillaris HOM05D007049 ORTHO05D008896 4.1e-20 101.3 87 62.1
Oeu023195.1 Olea europaea HOM05D007049 ORTHO05D008896 5.4e-20 100.9 86 64.0
Thecc.08G177900 Theobroma cacao HOM05D007049 ORTHO05D008896 5.4e-20 100.9 87 64.4
COL.COLO4_06913 Corchorus olitorius HOM05D007049 ORTHO05D008896 7.0e-20 100.5 84 65.5
Gohir.A13G115800 Gossypium hirsutum HOM05D007049 ORTHO05D008896 1.2e-19 99.8 89 61.8
Nitab4.5_0000213g0160 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.6e-19 99.4 91 59.3
Nitab4.5_0000398g0030 Nicotiana tabacum HOM05D007049 ORTHO05D008896 1.6e-19 99.4 91 59.3
CSS0000179 Camellia sinensis var. sinensis HOM05D007049 ORTHO05D008896 2.0e-19 99.0 86 65.1
CAN.G4100.1 Capsicum annuum HOM05D007049 ORTHO05D008896 2.7e-19 98.6 86 62.8
Cc10_g08690 Coffea canephora HOM05D007049 ORTHO05D008896 2.7e-19 98.6 93 60.2
FAN08G2573 Fragaria x ananassa HOM05D007049 ORTHO05D008896 2.7e-19 98.6 79 70.9
Hma1.2p1_0400F.1_g144580 Hydrangea macrophylla HOM05D007049 ORTHO05D008896 2.7e-19 98.6 86 64.0
Gohir.D13G119000 Gossypium hirsutum HOM05D007049 ORTHO05D008896 3.5e-19 98.2 89 60.7
Gorai.013G133400 Gossypium raimondii HOM05D007049 ORTHO05D008896 3.5e-19 98.2 89 60.7
TWI12G1157 Tripterygium wilfordii HOM05D007049 ORTHO05D008896 3.5e-19 98.2 84 64.3
Migut.C01376 Erythranthe guttata HOM05D007049 ORTHO05D008896 4.5e-19 97.8 86 64.0
PGSC0003DMG401002024 Solanum tuberosum HOM05D007049 ORTHO05D008896 4.5e-19 97.8 85 63.5
PGR042G0623 Punica granatum HOM05D007049 ORTHO05D008896 5.9e-19 97.4 88 60.2
Sabra01G0012700 Salix brachista HOM05D007049 ORTHO05D008896 7.7e-19 97.1 88 60.2
Cpa.g.sc19.285 Carica papaya HOM05D007049 ORTHO05D008896 1.0e-18 96.7 85 65.9
Solyc09g007070.1 Solanum lycopersicum HOM05D007049 ORTHO05D008896 1.0e-18 96.7 85 62.4
Sopen09g001930 Solanum pennellii HOM05D007049 ORTHO05D008896 1.0e-18 96.7 85 62.4
CAN.G608.33 Capsicum annuum HOM05D007049 ORTHO05D008896 2.9e-18 95.1 83 63.9
Lalb_Chr03g0041921 Lupinus albus HOM05D007049 ORTHO05D008896 2.9e-18 95.1 87 60.9
TAR624G1340 Trochodendron aralioides HOM05D007049 ORTHO05D008896 2.9e-18 95.1 81 64.2
Nn5g27287 Nelumbo nucifera HOM05D007049 ORTHO05D008896 6.5e-18 94.0 87 62.1
CANSAT25G3584 Cannabis sativa HOM05D007049 ORTHO05D008896 8.5e-18 93.6 87 63.2
Rhsim08G0116100 Rhododendron simsii HOM05D007049 ORTHO05D008896 3.2e-17 91.7 83 63.9
Prupe.8G008800 Prunus persica HOM05D007049 ORTHO05D008896 4.2e-17 91.3 68 77.9
VMungo1215G2220 Vigna mungo HOM05D007049 ORTHO05D008896 4.2e-17 91.3 85 58.8
Cfa019294 Carpinus fangiana HOM05D007049 ORTHO05D008896 5.5e-17 90.9 85 61.2
SalBow7G2968 Salvia bowleyana HOM05D007049 ORTHO05D008896 5.5e-17 90.9 86 58.1
Ah.05g168610 Amaranthus hybridus HOM05D007049 ORTHO05D008896 7.2e-17 90.5 88 58.0
arahy.Tifrunner.gnm1.ann1.6H88WF Arachis hypogaea HOM05D007049 ORTHO05D008896 7.2e-17 90.5 85 58.8
Eucgr.F02581 Eucalyptus grandis HOM05D007049 ORTHO05D008896 7.2e-17 90.5 79 62.0
MBI13_g30327_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 7.2e-17 90.5 81 63.0
Carub.0004s2178 Capsella rubella HOM05D007049 ORTHO05D008896 1.2e-16 89.7 85 58.8
Sed0002937 Sechium edule HOM05D007049 ORTHO05D008896 1.2e-16 89.7 87 58.6
DCAR_017595 Daucus carota HOM05D007049 ORTHO05D008896 2.1e-16 89.0 87 56.3
LjContig00222g0016429 Lotus japonicus HOM05D007049 ORTHO05D008896 2.1e-16 89.0 84 58.3
MBI13_g15314_MAGBIO Magnolia biondii HOM05D007049 ORTHO05D008896 2.1e-16 89.0 81 61.7
Phvul.002G036400 Phaseolus vulgaris HOM05D007049 ORTHO05D008896 2.1e-16 89.0 87 56.3
DCAR_006853 Daucus carota HOM05D007049 ORTHO05D008896 3.6e-16 88.2 87 56.3
Ca_24471_v3 Cicer arietinum L. HOM05D007049 ORTHO05D008896 4.7e-16 87.8 83 57.8
Aa31LG5G19930 Aethionema arabicum HOM05D007049 ORTHO05D008896 6.1e-16 87.4 85 57.6
ECA248G1776 Erigeron canadensis HOM05D007049 ORTHO05D008896 6.1e-16 87.4 92 55.4
AL4G37190 Arabidopsis lyrata HOM05D007049 ORTHO05D008896 8.0e-16 87.0 85 56.5
arahy.Tifrunner.gnm1.ann1.CT79FY Arachis hypogaea HOM05D007049 ORTHO05D008896 8.0e-16 87.0 82 58.5
Thhalv10017481m.g Eutrema salsugineum HOM05D007049 ORTHO05D008896 8.0e-16 87.0 85 55.3
Glyma.11G013800 Glycine max HOM05D007049 ORTHO05D008896 8.0e-16 87.0 90 55.6
CARHR134570 Cardamine hirsuta HOM05D007049 ORTHO05D008896 1.0e-15 86.7 85 56.5
THA.LOC104824284 Tarenaya hassleriana HOM05D007049 ORTHO05D008896 1.0e-15 86.7 84 58.3
TPR.G37942 Trifolium pratense HOM05D007049 ORTHO05D008896 1.0e-15 86.7 80 58.8
EL10Ac7g16149 Beta vulgaris HOM05D007049 ORTHO05D008896 1.4e-15 86.3 80 58.8
MELO3C022175.2 Cucumis melo HOM05D007049 ORTHO05D008896 1.4e-15 86.3 79 62.0
CsaV3_5G039970 Cucumis sativus L. HOM05D007049 ORTHO05D008896 1.4e-15 86.3 79 62.0
Psat2g187280 Pisum sativum HOM05D007049 ORTHO05D008896 1.4e-15 86.3 84 58.3
RcHm_v2.0_Chr6g0251481 Rosa chinensis HOM05D007049 ORTHO05D008896 1.4e-15 86.3 84 59.5
Psat7g180160 Pisum sativum HOM05D007049 ORTHO05D008896 1.8e-15 85.9 84 58.3
BcaC02g07431 Brassica carinata HOM05D007049 ORTHO05D008896 4.0e-15 84.7 81 55.6
C04p67530 Brassica napus HOM05D007049 ORTHO05D008896 4.0e-15 84.7 81 55.6
HanXRQChr10g0289041 Helianthus annuus HOM05D007049 ORTHO05D008896 4.0e-15 84.7 86 57.0
ClCG08G001090 Citrullus lanatus HOM05D007049 ORTHO05D008896 5.2e-15 84.3 93 54.8
Ciclev10023082m.g Citrus clementina HOM05D007049 ORTHO05D008896 6.8e-15 84.0 86 59.3
AT2G39725 Arabidopsis thaliana HOM05D007049 ORTHO05D008896 8.8e-15 83.6 85 55.3
Sc20g0003280 Simmondsia chinensis HOM05D007049 ORTHO05D008896 8.8e-15 83.6 71 66.2
Os08g0278600 Oryza sativa ssp. japonica HOM05D007049 ORTHO05D008896 1.2e-14 83.2 81 54.3
Psat7g180120 Pisum sativum HOM05D007049 ORTHO05D008896 2.0e-14 82.4 84 56.0
AUR62022356 Chenopodium quinoa HOM05D007049 ORTHO05D008896 3.4e-14 81.6 86 51.2
AUR62034352 Chenopodium quinoa HOM05D007049 ORTHO05D008896 3.4e-14 81.6 86 51.2
BcaB06g29104 Brassica carinata HOM05D007049 ORTHO05D008896 4.4e-14 81.3 90 51.1
BolC4t28250H Brassica oleracea HOM05D007049 ORTHO05D008896 5.7e-14 80.9 82 54.9
A04p30310 Brassica napus HOM05D007049 ORTHO05D008896 7.5e-14 80.5 82 54.9
Medtr5g008340 Medicago truncatula HOM05D007049 ORTHO05D008896 9.8e-14 80.1 80 56.2
BraA04t18476Z Brassica rapa HOM05D007049 ORTHO05D008896 1.3e-13 79.7 82 53.7
HanXRQChr04g0114811 Helianthus annuus HOM05D007049 ORTHO05D008896 1.3e-13 79.7 86 53.5
unitig_46.g17984 Utricularia gibba HOM05D007049 ORTHO05D008896 1.3e-13 79.7 84 57.1
Zm00001eb026180 Zea mays HOM05D007049 ORTHO05D008896 1.3e-13 79.7 86 50.0
FAN13G1882 Fragaria x ananassa HOM05D007049 ORTHO05D008896 1.7e-13 79.3 69 65.2
Psat7g180080 Pisum sativum HOM05D007049 ORTHO05D008896 1.7e-13 79.3 84 53.6
Sp4g21990 Schrenkiella parvula HOM05D007049 ORTHO05D008896 2.2e-13 79.0 84 52.4
Psat7g195680 Pisum sativum HOM05D007049 ORTHO05D008896 2.8e-13 78.6 84 56.0
PSO017G7166 Papaver somniferum HOM05D007049 ORTHO05D008896 9.2e-12 73.6 73 58.9
Aqoxy3G02546 Aquilegia oxysepala HOM05D007049 ORTHO05D008896 4.5e-11 71.2 75 52.0
ATR0057G071 Amborella trichopoda HOM05D007049 ORTHO05D008896 1.3e-10 69.7 78 48.7
HPP92_017350 Vanilla planifolia HOM05D007049 ORTHO05D008896 1.7e-10 69.3 81 48.1
Pp3c4_6780 Physcomitrium patens HOM05D007049 ORTHO05D008896 5.0e-10 67.8 75 53.3
Potri.001G018100 Populus trichocarpa HOM05D007049 ORTHO05D008896 6.6e-10 67.4 59 66.1
Manes.01G011600 Manihot esculenta HOM05D007049 ORTHO05D008896 3.3e-09 65.1 66 62.1
MD05G1008200 Malus domestica HOM05D007049 ORTHO05D008896 2.1e-08 62.4 44 77.3
Mapoly0004s0187 Marchantia polymorpha HOM05D007049 ORTHO05D008896 2.1e-08 62.4 79 48.1
SMO353G0203 Selaginella moellendorffii HOM05D007049 ORTHO05D008896 3.6e-08 61.6 75 46.7
SHI21473 Sapria himalayana HOM05D000105 ORTHO05D000023 8.0e-08 60.5 68 50.0
SGA_v2.0_scaffold118G32610 Striga asiatica HOM05D007049 ORTHO05D008896 1.2e-06 56.6 59 55.9


User provided reference genes

Program Settings