Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G004800 Prunus persica HOM05D000002 ORTHO05D000001 7.9e-32 139.8 70 100.0
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.7e-14 80.5 49 75.5
CSS0049429 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-14 80.1 53 73.6
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.4e-14 80.1 49 81.6
TWI56G1078 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 7.4e-14 80.1 53 71.7
CSS0036210 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-13 78.6 52 71.2
TWI60G0947 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.2e-13 78.6 53 73.6
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.8e-13 78.2 49 77.6
CSS0036759 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.7e-13 77.8 50 78.0
Nn1g02566 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.8e-13 77.4 52 71.2
Nn5g31277 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.8e-13 77.4 52 71.2
CSS0002244 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-13 77.0 49 75.5
Hma1.2p1_0184F.1_g081330 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.3e-13 77.0 49 75.5
Nn4g25618 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-12 76.3 48 75.0
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-12 75.9 49 75.5
PSO170G4322 Papaver somniferum HOM05D000002 ORTHO05D000001 1.4e-12 75.9 49 77.6
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-12 75.5 49 73.5
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-12 75.5 49 73.5
Nn1g09172 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.8e-12 75.5 46 76.1
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-12 75.1 46 78.3
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.4e-12 75.1 49 73.5
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 5.3e-12 73.9 52 71.2
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-12 73.6 52 65.4
PSO170G4825 Papaver somniferum HOM05D000002 ORTHO05D000001 7.0e-12 73.6 49 75.5
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 7.0e-12 73.6 50 72.0
CSS0015757 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.1e-12 73.2 49 75.5
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-11 72.8 49 71.4
CSS0042948 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-11 72.4 49 69.4
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-11 72.4 51 70.6
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-11 72.4 51 70.6
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-11 72.4 51 70.6
Sopen11g022020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-11 72.4 51 70.6
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-11 72.0 52 69.2
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-11 72.0 50 70.0
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 2.0e-11 72.0 50 70.0
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-11 72.0 51 70.6
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-11 72.0 49 73.5
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-11 72.0 51 70.6
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-11 72.0 51 70.6
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-11 72.0 51 70.6
CSS0040360 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-11 71.6 50 68.0
Nn4g26208 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-11 71.6 52 67.3
Nn7g38406 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.6e-11 71.6 49 75.5
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-11 71.6 51 70.6
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.5e-11 71.2 52 67.3
TWI18G1021 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 3.5e-11 71.2 53 64.2
Sopen02g011630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-11 70.9 45 71.1
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-11 70.9 51 68.6
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-11 70.5 49 67.3
CSS0027562 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.9e-11 70.5 52 63.5
PSO675G7622 Papaver somniferum HOM05D000002 ORTHO05D000001 5.9e-11 70.5 49 73.5
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.7e-11 70.1 50 66.0
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.7e-11 70.1 53 62.3
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 7.7e-11 70.1 50 68.0
CSS0002225 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-10 69.7 52 63.5
CSS0035415 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-10 69.7 49 67.3
CSS0040555 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-10 69.7 52 65.4
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-10 69.7 50 68.0
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 1.0e-10 69.7 53 62.3
CSS0015876 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-10 69.3 52 63.5
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-10 69.3 52 65.4
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 1.3e-10 69.3 49 71.4
Nn1g02755 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-10 69.3 52 73.1
Nn4g24443 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-10 69.3 51 70.6
Sopen10g024510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-10 69.3 51 68.6
Sopen12g017790 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-10 69.3 51 68.6
CSS0000424 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.7e-10 68.9 59 59.3
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-10 68.9 51 66.7
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-10 68.6 51 68.6
CSS0045806 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-10 68.6 49 67.3
CSS0046044 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-10 68.6 40 77.5
Nn1g06977 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-10 68.6 52 71.2
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-10 68.6 53 60.4
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-10 68.2 50 64.0
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-10 68.2 49 65.3
CSS0032896 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-10 67.8 50 72.0
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.8e-10 67.8 50 64.0
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.8e-10 67.8 50 64.0
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-10 67.8 51 62.7
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-10 67.8 51 62.7
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-10 67.8 51 62.7
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-10 67.8 48 70.8
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.8e-10 67.8 48 70.8
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 3.8e-10 67.8 51 66.7
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.0e-10 67.4 52 63.5
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.5e-10 67.0 53 66.0
PSO832G2657 Papaver somniferum HOM05D000002 ORTHO05D000001 6.5e-10 67.0 46 69.6
RcHm_v2.0_Chr1g0329831 Rosa chinensis HOM05D000002 ORTHO05D000001 6.5e-10 67.0 51 70.6
Nn6g32260 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.5e-10 66.6 52 71.2
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 8.5e-10 66.6 52 63.5
CSS0020407 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-09 66.2 49 63.3
Nn1g04039 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-09 66.2 53 60.4
Sopen01g009120 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 66.2 48 70.8
CSS0014778 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-09 65.9 49 63.3
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-09 65.9 50 66.0
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.5e-09 65.9 49 65.3
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 52 61.5
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 46 71.7
TWI32G0787 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.5e-09 65.9 53 60.4
CSS0014796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-09 65.5 45 66.7
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 1.9e-09 65.5 52 61.5
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 1.9e-09 65.5 52 61.5
Nn1g08060 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.9e-09 65.5 49 65.3
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-09 65.5 49 63.3
CSS0008000 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 3.2e-09 64.7 52 65.4
CSS0012950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-09 64.7 46 71.7
CsaV3_6G019120 Cucumis sativus L. HOM05D000002 ORTHO05D000001 3.2e-09 64.7 37 78.4
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.2e-09 64.7 45 68.9
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.2e-09 64.7 45 68.9
Sopen08g006700 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-09 64.7 51 68.6
EL10Ac8g19578 Beta vulgaris HOM05D000002 ORTHO05D000001 4.2e-09 64.3 51 66.7
CSS0027637 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-09 64.3 49 61.2
Sopen07g013220 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-09 64.3 51 64.7
CSS0015467 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.5e-09 63.9 40 77.5
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.5e-09 63.9 45 68.9
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 5.5e-09 63.9 46 65.2
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.5e-09 63.9 52 59.6
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.2e-09 63.5 46 71.7
Sopen01g009150 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-09 63.5 48 68.8
Sopen09g023360 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-09 63.5 51 60.8
FvH4_3g45132 Fragaria vesca HOM05D000002 ORTHO05D000001 9.4e-09 63.2 53 60.4
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.2e-08 62.8 49 59.2
Atru.chr4.75 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-08 62.4 38 71.1
FvH4_6g43841 Fragaria vesca HOM05D000002 ORTHO05D000001 1.6e-08 62.4 54 53.7
Nn6g34150 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.6e-08 62.4 49 61.2
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.1e-08 62.0 52 55.8
Manes.13G106550 Manihot esculenta HOM05D000002 ORTHO05D000001 2.7e-08 61.6 47 66.0
Sopen11g010290 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-08 61.6 49 61.2
CsaV3_2G009910 Cucumis sativus L. HOM05D002640 ORTHO05D003231 3.6e-08 61.2 52 65.4
CSS0019043 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.7e-08 60.8 50 64.0
ECA248G1474 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.7e-08 60.8 49 57.1
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.7e-08 60.8 38 73.7
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 4.7e-08 60.8 57 56.1
Ciclev10027289m.g Citrus clementina HOM05D000002 ORTHO05D000001 6.1e-08 60.5 46 58.7
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 6.1e-08 60.5 37 73.0
CSS0001757 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.0e-07 59.7 37 75.7
CAN.G906.1 Capsicum annuum HOM05D000002 ORTHO05D000001 1.0e-07 59.7 51 62.7
ECA240G1585 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-07 59.7 52 51.9
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.0e-07 59.7 38 71.1
ECA233G2170 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-07 59.3 49 57.1
ECA232G0373 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-07 58.9 52 51.9
CSS0023125 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-07 58.5 31 87.1
ECA234G4446 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-07 58.5 49 57.1
ECA246G0077 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-07 58.5 51 52.9
Nn4g26284 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.3e-07 58.5 45 62.2
ECA233G4132 Erigeron canadensis HOM05D000089 ORTHO05D000001 3.0e-07 58.2 49 53.1
ECA233G1773 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-07 57.8 49 57.1
Sopen01g016080 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-07 57.8 37 62.2
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-07 57.4 44 59.1
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 5.2e-07 57.4 36 72.2
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.7e-07 57.0 52 46.2
ECA246G4670 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.7e-07 57.0 52 50.0
Sopen04g012630 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-07 57.0 37 62.2
Sopen10g007410 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-07 57.0 36 63.9
Sopen05g014860 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-07 56.6 37 62.2
PGSC0003DMG400046219 Solanum tuberosum HOM05D000002 ORTHO05D000001 8.8e-07 56.6 51 52.9
C03p36830 Brassica napus HOM05D000002 ORTHO05D000001 1.2e-06 56.2 49 51.0
VMungo1215G0466 Vigna mungo HOM05D000198 ORTHO05D019805 1.2e-06 56.2 50 54.0
Lalb_Chr10g0097361 Lupinus albus HOM05D000002 ORTHO05D000001 1.5e-06 55.8 49 51.0
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.5e-06 55.8 44 65.9
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 2.0e-06 55.5 49 57.1
ECA238G0437 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 55.5 49 49.0
CSS0016553 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-06 55.1 37 73.0
CSS0024524 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-06 55.1 37 73.0
ECA248G2341 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.3e-06 54.7 49 53.1
CSS0008047 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-06 54.3 69 44.9
Ciclev10023933m.g Citrus clementina HOM05D000002 ORTHO05D000001 4.4e-06 54.3 38 68.4
Lalb_Chr15g0084801 Lupinus albus HOM05D000002 ORTHO05D000001 5.7e-06 53.9 46 54.3
Sopen02g012250 Solanum pennellii HOM05D000004 ORTHO05D000002 5.7e-06 53.9 37 56.8
Ca_24790_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.5e-06 53.5 52 51.9
ECA240G2424 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.7e-06 53.1 50 52.0
Sopen09g024520 Solanum pennellii HOM05D000002 ORTHO05D000001 9.7e-06 53.1 37 56.8
Sopen11g023430 Solanum pennellii HOM05D000002 ORTHO05D000001 9.7e-06 53.1 43 51.2
Sopen12g023020 Solanum pennellii HOM05D000002 ORTHO05D000001 9.7e-06 53.1 36 58.3


User provided reference genes

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