Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 4.1e-52 208.0 122 100.0
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 1.1e-28 130.2 123 68.3
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 5.8e-22 107.8 127 55.9
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 4.2e-20 101.7 127 52.8
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 4.6e-19 98.2 128 51.6
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 6.0e-19 97.8 117 55.6
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 7.9e-19 97.4 129 51.2
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 1.1e-17 93.6 115 51.3
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 2.5e-17 92.4 118 54.2
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 5.6e-17 91.3 97 57.7
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 1.6e-16 89.7 107 55.1
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 2.1e-16 89.4 116 53.4
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 3.6e-16 88.6 112 50.0
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 2.4e-15 85.9 107 49.5
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 5.3e-15 84.7 118 46.6
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 9.0e-15 84.0 96 51.0
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 9.0e-15 84.0 121 45.5
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.2e-14 83.6 121 44.6
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 2.6e-14 82.4 73 60.3
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 9.9e-14 80.5 110 49.1
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 1.3e-13 80.1 78 56.4
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 2.2e-13 79.3 110 47.3
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 6.4e-13 77.8 79 58.2
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 1.1e-12 77.0 112 46.4
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 3.2e-12 75.5 126 42.1
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 5.4e-12 74.7 81 55.6
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 9.3e-12 73.9 85 52.9
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 2.7e-11 72.4 85 51.8
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 7.9e-11 70.9 85 51.8
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 1.0e-10 70.5 116 43.1
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 2.3e-10 69.3 109 46.8
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 3.0e-10 68.9 77 51.9
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 3.9e-10 68.6 108 42.6
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 8.7e-10 67.4 74 50.0
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 1.5e-09 66.6 108 41.7
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 3.3e-09 65.5 102 48.0
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 4.3e-09 65.1 81 53.1
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 5.6e-09 64.7 127 37.8
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 7.4e-09 64.3 123 36.6
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 9.6e-09 63.9 90 46.7
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 9.6e-09 63.9 108 48.1
Lj4g0016291 Lotus japonicus HOM05D020160 ORTHO05D010346 9.6e-09 63.9 112 44.6
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 9.6e-09 63.9 67 47.8
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 1.3e-08 63.5 105 42.9
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 2.8e-08 62.4 61 60.7
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 2.8e-08 62.4 61 59.0
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 2.8e-08 62.4 104 45.2
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 2.8e-08 62.4 107 47.7
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 4.8e-08 61.6 64 51.6
Solyc06g071760.1 Solanum lycopersicum HOM05D008378 ORTHO05D010346 6.2e-08 61.2 95 41.1
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 8.1e-08 60.8 56 62.5
Glyma.17G084800 Glycine max HOM05D020160 ORTHO05D010346 1.1e-07 60.5 111 43.2
AL8G24190 Arabidopsis lyrata HOM05D008378 ORTHO05D010346 1.4e-07 60.1 97 47.4
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 1.8e-07 59.7 56 58.9
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 2.4e-07 59.3 74 45.9
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 3.1e-07 58.9 100 41.0
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.1e-07 58.9 108 42.6
Nitab4.5_0001683g0020 Nicotiana tabacum HOM05D008378 ORTHO05D010346 5.3e-07 58.2 85 42.4
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 6.9e-07 57.8 104 43.3
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 9.0e-07 57.4 88 42.0
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 1.2e-06 57.0 124 38.7
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.2e-06 57.0 80 42.5
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 1.5e-06 56.6 107 43.9
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 1.5e-06 56.6 107 43.9
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 1.5e-06 56.6 107 43.9
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 1.5e-06 56.6 107 43.9
VMungo1215G1140 Vigna mungo HOM05D020160 ORTHO05D010346 2.6e-06 55.8 114 41.2
Phvul.003G204900 Phaseolus vulgaris HOM05D020160 ORTHO05D010346 3.4e-06 55.5 111 39.6
Aa31sc170G40 Aethionema arabicum HOM05D008378 ORTHO05D010346 4.5e-06 55.1 107 38.3
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 4.5e-06 55.1 107 43.0
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 4.5e-06 55.1 80 41.2
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.5e-06 55.1 87 42.5
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.5e-06 55.1 80 41.2
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 5.8e-06 54.7 106 38.7
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 7.6e-06 54.3 87 42.5
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.6e-06 54.3 80 41.2


User provided reference genes

Program Settings