Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.2e-97 359.0 184 100.0
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 7.5e-82 307.4 173 88.4
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.8e-79 297.4 173 86.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.7e-73 279.6 184 79.3
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.9e-72 276.2 178 78.7
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.2e-71 273.5 171 81.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.1e-71 272.7 173 81.5
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.3e-70 270.0 177 76.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.1e-69 266.9 172 79.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.3e-69 265.0 172 77.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-68 263.5 172 77.3
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.2e-68 263.5 172 77.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.2e-68 263.5 173 79.2
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.8e-68 262.3 174 79.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.6e-68 261.9 172 78.5
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 6.2e-68 261.2 169 78.1
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 8.1e-68 260.8 168 78.0
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 8.1e-68 260.8 173 76.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.4e-67 260.0 172 78.5
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.4e-67 260.0 177 76.3
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.4e-67 259.2 173 78.6
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 3.1e-67 258.8 170 80.0
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.1e-67 258.8 173 76.9
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 3.1e-67 258.8 172 78.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.0e-67 258.5 173 77.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 6.8e-67 257.7 173 74.6
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.2e-66 256.9 172 75.6
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.2e-66 256.9 169 77.5
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.5e-66 256.5 173 75.1
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.0e-66 256.1 173 76.3
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 3.4e-66 255.4 174 75.3
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 5.8e-66 254.6 174 75.9
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 5.8e-66 254.6 173 76.9
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 7.6e-66 254.2 173 75.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.3e-65 253.4 179 72.1
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.7e-65 253.1 177 74.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.8e-65 251.9 169 76.3
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.1e-64 250.4 193 70.5
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.9e-64 249.6 173 74.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 3.2e-64 248.8 172 76.2
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.6e-63 246.5 169 76.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.6e-63 246.5 174 69.5
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.1e-63 246.1 174 72.4
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 4.6e-63 245.0 182 70.3
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 6.0e-63 244.6 169 75.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.3e-62 242.7 163 77.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 3.0e-62 242.3 164 76.2
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.0e-62 242.3 173 74.6
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 3.9e-62 241.9 168 73.8
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 5.1e-62 241.5 159 76.7
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 8.7e-62 240.7 170 72.9
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.1e-61 240.4 170 72.4
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.1e-61 240.4 172 70.3
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 168 70.8
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 169 72.2
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.5e-61 239.2 169 72.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.3e-61 238.4 173 71.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 4.3e-61 238.4 169 72.2
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.6e-61 238.0 159 76.1
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.3e-60 236.9 167 71.9
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.6e-60 236.5 202 63.4
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.6e-60 236.5 173 69.9
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.1e-60 236.1 169 71.0
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.8e-60 235.7 164 71.3
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.8e-60 235.7 162 72.2
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.8e-60 235.7 161 69.6
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 3.6e-60 235.3 168 69.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 3.6e-60 235.3 168 69.0
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 3.6e-60 235.3 168 69.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 3.6e-60 235.3 168 69.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.8e-60 235.0 169 71.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.2e-60 234.6 172 69.2
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 6.2e-60 234.6 181 66.3
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 6.2e-60 234.6 164 71.3
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 6.2e-60 234.6 164 71.3
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 6.2e-60 234.6 173 68.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-59 233.8 168 68.5
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.1e-59 233.8 160 72.5
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.4e-59 233.4 173 68.2
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.4e-59 232.6 168 72.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.4e-59 232.6 173 69.4
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.0e-59 231.9 170 67.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 4.0e-59 231.9 168 70.2
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 4.0e-59 231.9 168 70.2
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 4.0e-59 231.9 160 71.2
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.0e-59 231.9 172 68.6
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 6.9e-59 231.1 172 68.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 6.9e-59 231.1 168 70.2
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 6.9e-59 231.1 162 70.4
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.9e-59 231.1 175 67.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 9.0e-59 230.7 173 67.1
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.5e-58 229.9 185 68.1
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 4.4e-58 228.4 168 70.8
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 5.8e-58 228.0 185 65.4
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 7.6e-58 227.6 173 66.5
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 9.9e-58 227.3 160 70.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-57 226.5 164 68.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.9e-57 225.7 185 67.0
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.9e-57 225.7 163 65.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.9e-57 224.9 162 68.5
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 6.4e-57 224.6 155 76.8
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.4e-56 222.6 176 66.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.2e-56 221.9 155 72.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.2e-55 220.3 173 64.2
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.6e-55 219.9 163 68.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 2.1e-55 219.5 167 66.5
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.1e-55 219.5 185 65.9
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 2.7e-55 219.2 218 57.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.6e-55 218.4 153 71.2
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 4.6e-55 218.4 153 71.2
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 4.6e-55 218.4 166 67.5
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-55 218.0 159 69.2
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 6.0e-55 218.0 153 70.6
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 7.9e-55 217.6 191 61.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.0e-54 217.2 168 68.5
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 5.1e-54 214.9 166 66.3
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.6e-54 214.5 161 63.4
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 8.7e-54 214.2 164 64.6
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.5e-53 213.4 174 65.5
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 4.3e-53 211.8 174 63.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 7.3e-53 211.1 193 58.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.8e-52 209.1 153 68.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.8e-52 209.1 170 67.1
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 3.6e-52 208.8 173 63.0
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.8e-52 208.4 168 66.1
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.2e-52 208.0 146 72.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 2.6e-50 202.6 188 58.5
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 5.8e-50 201.4 127 81.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 6.4e-49 198.0 124 78.2
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.4e-48 196.1 122 78.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 3.2e-48 195.7 147 67.3
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.2e-48 195.7 167 64.1
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 3.2e-48 195.7 124 76.6
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.3e-48 194.1 124 74.2
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.5e-47 192.2 123 77.2
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 7.9e-47 191.0 123 77.2
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 6.7e-46 188.0 123 76.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.5e-45 186.8 122 82.0
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-42 177.2 145 64.1
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.6e-42 176.0 129 70.5
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 3.4e-42 175.6 130 69.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.7e-41 173.3 125 66.4
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 2.9e-41 172.6 140 61.4
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 8.4e-41 171.0 149 55.7
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.3e-38 162.9 143 55.9
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.9e-38 162.2 162 50.6
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.5e-37 160.2 140 56.4
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.3e-37 158.7 151 52.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 4.8e-36 155.2 123 62.6
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 6.2e-36 154.8 119 65.5
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.6e-34 149.4 153 51.0
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.0e-33 147.5 155 45.8
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 2.9e-33 146.0 111 67.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 4.6e-31 138.7 88 76.1
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.2e-28 129.8 163 48.5
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.8e-27 126.7 108 63.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 6.9e-27 124.8 111 62.2
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 4.1e-19 99.0 90 60.0
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 8.8e-14 81.3 78 51.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 5.3e-11 72.0 49 69.4
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.0e-09 67.8 44 75.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-09 67.8 46 76.1
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-09 67.8 46 76.1
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.0e-09 65.5 47 72.3
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 5.0e-09 65.5 46 71.7
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 2.7e-07 59.7 56 58.9


User provided reference genes

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