Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.2e-183 646.4 326 100.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 7.9e-175 617.1 326 95.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 4.5e-130 468.4 324 74.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.8e-129 465.3 325 75.4
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.1e-128 463.8 324 74.7
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.5e-128 462.6 289 81.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.8e-124 448.4 327 70.9
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.7e-119 431.8 324 67.9
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-117 426.0 331 67.1
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.4e-117 425.2 327 67.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.7e-117 424.9 327 67.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.7e-117 424.9 327 67.0
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.2e-116 422.9 327 66.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 6.3e-116 421.4 324 66.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 7.0e-115 417.9 327 67.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.0e-114 416.4 327 65.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.0e-114 416.4 325 68.6
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.5e-114 415.2 327 64.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 2.9e-113 412.5 323 65.0
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 5.0e-113 411.8 323 65.3
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.0e-113 411.8 328 67.4
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 5.0e-113 411.8 323 67.8
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 6.6e-113 411.4 323 65.6
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.5e-112 410.2 330 67.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.5e-112 410.2 324 67.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.9e-112 409.8 328 64.9
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.5e-112 409.5 328 65.9
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 2.1e-111 406.4 327 65.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.8e-111 406.0 327 65.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 1.0e-110 404.1 289 70.6
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.3e-110 402.9 328 65.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.2e-109 400.6 323 63.5
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.5e-109 400.2 314 68.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.4e-109 399.1 333 63.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 4.4e-109 398.7 324 64.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 9.8e-109 397.5 325 65.5
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.2e-108 396.4 326 65.3
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.9e-108 396.0 333 63.1
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.9e-108 396.0 338 62.4
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 6.4e-108 394.8 337 61.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 9.2e-107 391.0 327 63.0
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.2e-106 390.6 322 64.0
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 7.8e-106 387.9 325 62.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 5.0e-105 385.2 328 60.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 6.6e-105 384.8 323 65.6
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 8.6e-105 384.4 326 60.4
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 3.3e-104 382.5 330 60.9
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.6e-104 381.7 294 70.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.6e-103 379.0 297 69.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-102 377.1 324 64.8
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.4e-102 377.1 323 61.9
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.3e-102 376.3 330 59.7
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.1e-102 375.9 324 65.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.9e-102 374.4 325 59.4
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.2e-101 374.0 327 62.4
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.2e-101 374.0 298 63.8
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 4.4e-101 372.1 331 59.8
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 2.2e-100 369.8 304 63.5
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.4e-99 366.3 325 60.9
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.4e-99 365.2 328 58.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.4e-99 365.2 353 56.7
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 2.7e-98 362.8 294 64.6
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 4.6e-98 362.1 326 57.7
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 6.0e-98 361.7 330 57.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.3e-97 359.8 330 56.7
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 5.0e-97 358.6 328 59.1
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.5e-96 357.1 326 58.3
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.3e-96 355.9 323 57.3
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.3e-96 355.9 324 60.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.3e-96 355.5 327 57.8
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 5.6e-96 355.1 333 57.4
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-95 353.6 332 56.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 4.7e-95 352.1 344 56.1
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 6.2e-95 351.7 328 57.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.1e-95 351.3 295 64.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.1e-94 350.9 331 56.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.8e-94 350.1 315 57.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 5.2e-94 348.6 334 57.8
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 4.4e-93 345.5 328 55.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 9.9e-93 344.4 326 57.1
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.7e-92 343.6 325 54.5
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 3.7e-92 342.4 316 56.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 8.3e-92 341.3 334 57.2
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 3.2e-91 339.3 304 60.5
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.6e-90 337.0 329 55.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.0e-89 334.3 294 59.9
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.7e-89 333.6 294 60.2
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-88 328.9 328 55.5
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 3.6e-87 325.9 249 67.9
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 8.1e-87 324.7 295 59.7
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 5.2e-86 322.0 281 60.9
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 3.2e-83 312.8 357 51.3
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 8.7e-81 304.7 217 68.7
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.1e-78 297.7 241 63.1
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-78 297.4 344 48.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-78 296.6 344 48.8
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.4e-77 292.7 344 48.0
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 7.6e-77 291.6 315 54.9
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.2e-76 290.0 252 59.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.4e-75 286.6 324 49.4
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.2e-75 286.2 344 48.5
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.1e-74 283.5 326 48.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 5.6e-72 275.4 354 45.2
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.1e-70 269.6 305 51.1
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 6.9e-70 268.5 357 44.5
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.2e-67 259.6 295 46.4
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 4.2e-67 259.2 281 53.0
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 9.3e-67 258.1 232 62.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-66 257.7 251 59.4
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-66 257.7 251 59.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.6e-66 255.8 216 58.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.9e-65 252.7 328 48.2
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-64 249.2 276 49.3
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-62 244.6 325 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 7.6e-61 238.4 273 48.7
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 3.2e-59 233.0 243 49.4
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 5.5e-59 232.3 174 67.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 9.3e-59 231.5 267 46.8
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.3e-56 223.0 246 50.4
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.1e-55 220.3 207 57.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.1e-54 216.5 246 51.6
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.1e-49 199.1 269 45.7
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 1.9e-48 197.2 251 45.8
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 4.3e-48 196.1 212 52.8
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 8.2e-47 191.8 122 73.0
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 3.8e-44 183.0 179 55.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.0e-44 182.6 276 41.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.1e-43 181.4 151 60.3
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.2e-43 179.9 130 69.2
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 5.1e-41 172.6 176 53.4
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 7.7e-37 158.7 251 37.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.7e-36 157.5 159 56.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-34 150.2 148 52.7
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.8e-33 147.5 157 58.0
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.1e-33 146.0 201 45.3
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.2e-31 140.6 159 47.8
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.6e-26 124.4 278 30.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.3e-25 120.6 153 50.3
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 9.7e-24 115.2 73 74.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.8e-17 94.4 285 25.6
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 4.0e-17 93.2 230 32.6
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.2e-13 81.6 65 63.1
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.5e-13 80.1 103 47.6
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 9.8e-08 62.0 68 48.5
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 9.8e-08 62.0 174 31.0
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 4.1e-06 56.6 30 80.0


User provided reference genes

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