Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 4.4e-172 607.8 302 100.0
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.2e-146 521.9 296 88.5
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 3.1e-125 452.2 300 75.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 4.5e-124 448.4 304 73.7
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 5.9e-124 448.0 304 74.0
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.2e-123 446.0 304 72.7
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 7.2e-122 441.0 297 73.4
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 4.6e-121 438.3 304 72.4
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.8e-120 436.4 305 70.8
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.7e-120 434.5 296 72.0
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 3.3e-119 432.2 302 70.5
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.3e-119 431.8 303 71.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.3e-118 430.3 304 71.1
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 6.3e-118 427.9 305 69.5
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.1e-117 425.6 302 69.5
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 3.1e-117 425.6 302 69.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 5.3e-117 424.9 309 68.9
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.3e-117 424.9 302 68.9
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 5.3e-117 424.9 304 69.4
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.0e-116 422.9 304 68.4
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.6e-116 422.5 305 68.9
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.4e-116 422.2 305 69.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.7e-115 419.9 301 69.1
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.9e-115 419.1 296 70.6
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 3.8e-115 418.7 300 69.7
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 8.5e-115 417.5 299 69.6
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 8.5e-115 417.5 302 66.6
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.1e-114 417.2 296 69.9
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.4e-114 416.8 305 68.2
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.9e-114 416.4 303 67.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 3.2e-114 415.6 304 69.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.5e-114 414.8 300 66.3
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.2e-113 413.7 304 67.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.6e-113 413.3 295 69.8
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.1e-113 412.9 300 66.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 2.1e-113 412.9 304 67.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.7e-113 412.5 300 68.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 2.7e-113 412.5 296 69.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.6e-113 412.1 295 69.5
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 4.7e-113 411.8 301 69.4
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 4.7e-113 411.8 300 70.0
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 6.1e-113 411.4 297 69.7
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 7.9e-113 411.0 296 68.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.0e-112 410.6 296 68.9
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.0e-112 410.6 306 67.3
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.8e-112 409.8 296 68.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.8e-112 409.8 296 68.6
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 2.3e-112 409.5 296 69.9
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 3.0e-112 409.1 350 61.4
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.0e-112 409.1 306 68.0
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 3.9e-112 408.7 301 67.4
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 3.9e-112 408.7 299 68.9
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 6.7e-112 407.9 296 68.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.0e-111 406.4 295 72.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-111 406.0 295 72.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-111 404.8 295 71.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.7e-110 403.3 295 72.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 6.3e-110 401.4 295 71.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.3e-110 401.4 294 72.1
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.3e-110 401.4 294 72.1
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-109 400.2 295 70.8
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 2.4e-109 399.4 296 66.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-109 399.1 295 70.8
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.1e-109 399.1 295 70.8
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.1e-109 399.1 303 65.0
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.5e-108 395.6 302 65.6
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 4.5e-108 395.2 306 63.4
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 7.7e-108 394.4 285 68.8
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.9e-107 392.5 296 68.9
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 8.5e-107 391.0 306 64.4
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.9e-106 389.8 299 64.9
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.5e-106 389.4 294 66.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 3.2e-106 389.0 296 65.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.5e-106 388.3 302 64.2
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 5.5e-106 388.3 294 66.3
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.2e-105 387.1 298 65.4
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.2e-105 387.1 298 65.4
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.1e-105 386.3 295 66.1
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.0e-104 384.0 296 63.5
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-104 384.0 294 69.4
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 8.8e-104 380.9 297 63.3
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 8.8e-104 380.9 307 62.5
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.5e-103 380.2 295 64.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 2.6e-103 379.4 295 63.7
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 4.4e-103 378.6 295 65.1
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 2.2e-102 376.3 295 65.1
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.7e-102 375.6 275 67.3
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 6.3e-102 374.8 295 63.1
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 3.1e-101 372.5 274 66.1
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 4.5e-100 368.6 294 62.2
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.7e-99 366.7 294 62.2
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.5e-98 361.7 297 60.9
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 2.1e-97 359.8 305 61.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.8e-96 354.8 294 60.9
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.8e-95 350.9 233 71.2
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.3e-94 350.5 295 60.3
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.3e-94 350.5 296 59.8
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.3e-94 348.2 296 59.5
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 8.3e-94 347.8 295 60.0
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 9.1e-93 344.4 259 67.2
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.2e-92 344.0 294 58.8
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 5.0e-91 338.6 295 58.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.5e-90 337.0 295 57.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.1e-89 331.6 294 56.5
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.0e-88 330.9 337 51.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-88 329.7 209 79.4
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.0e-87 326.6 294 54.8
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 2.6e-87 326.2 294 54.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.6e-87 326.2 309 59.5
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.5e-87 324.7 237 66.7
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.8e-86 322.8 315 56.8
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 3.1e-85 319.3 294 54.1
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 3.1e-85 319.3 294 54.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.2e-84 317.4 294 54.8
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.7e-84 316.2 306 56.5
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.5e-84 315.5 294 54.8
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 7.7e-84 314.7 295 53.9
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 7.7e-84 314.7 295 53.9
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.0e-83 314.3 296 53.7
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 5.0e-83 312.0 294 54.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 8.0e-81 304.7 294 53.4
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 7.5e-79 298.1 295 51.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.2e-77 292.7 313 48.9
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 3.2e-77 292.7 295 51.9
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 5.4e-77 292.0 183 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 9.2e-77 291.2 292 51.4
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.3e-70 270.8 197 63.5
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 6.4e-70 268.5 304 47.4
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.9e-69 266.9 308 48.1
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.3e-66 255.0 218 59.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 8.1e-65 251.5 245 52.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 3.4e-55 219.5 150 68.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.2e-53 213.0 171 57.9
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 4.1e-53 212.6 145 69.0
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.8e-49 199.9 335 37.9
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 6.8e-48 195.3 154 66.9
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.7e-44 183.3 201 52.2
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.8e-41 173.3 151 63.6
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 7.4e-34 148.7 225 39.1
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 9.0e-24 115.2 78 66.7
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.5e-21 107.1 152 45.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 2.1e-20 104.0 238 31.5
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 3.0e-19 100.1 311 28.9
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.9e-18 97.4 230 28.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 4.1e-16 89.7 52 75.0
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.0e-15 87.4 246 26.0
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.7e-14 84.3 72 52.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 3.8e-14 83.2 281 26.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.5e-13 80.5 89 51.7
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.2e-13 80.1 52 67.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.3e-11 73.9 98 46.9
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-10 71.6 86 50.0
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.4e-10 68.9 49 59.2
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.6e-09 67.8 53 58.5
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.2e-09 67.4 231 31.2
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 6.3e-09 65.9 60 46.7
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.4e-07 60.1 287 24.7


User provided reference genes

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