Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G271800 Prunus persica HOM05D007202 ORTHO05D009125 5.3e-241 838.2 495 100.0
RcHm_v2.0_Chr4g0408911 Rosa chinensis HOM05D007202 ORTHO05D009125 2.1e-157 560.5 495 72.3
QL12p025863 Quercus lobata HOM05D007202 ORTHO05D009125 4.7e-149 532.7 497 70.4
Haze_11774 Corylus avellana HOM05D007202 ORTHO05D009125 1.5e-147 527.7 495 69.3
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 1.7e-143 514.2 495 68.9
FAN12G2678 Fragaria x ananassa HOM05D007202 ORTHO05D009125 1.7e-143 514.2 495 67.1
FvH4_4g11723 Fragaria vesca HOM05D007202 ORTHO05D009125 1.9e-142 510.8 495 66.5
FAN12G3533 Fragaria x ananassa HOM05D007202 ORTHO05D009125 2.5e-142 510.4 495 66.7
Dinv07882 Davidia involucrata HOM05D007202 ORTHO05D009125 8.4e-138 495.4 496 66.3
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 1.2e-131 474.9 496 65.5
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 2.4e-129 467.2 501 64.1
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 2.0e-123 447.6 496 63.3
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 2.5e-121 440.7 497 61.0
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 1.6e-120 438.0 497 62.2
Atru.chr11.1126 Acer truncatum HOM05D007202 ORTHO05D009125 2.1e-120 437.6 495 63.2
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 2.7e-120 437.2 487 61.2
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 2.7e-120 437.2 471 49.3
Ciclev10030697m.g Citrus clementina HOM05D007202 ORTHO05D009125 1.8e-119 434.5 466 62.9
Manes.10G042000 Manihot esculenta HOM05D007202 ORTHO05D009125 4.8e-117 426.4 497 61.8
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 1.1e-116 425.2 444 50.9
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 2.4e-116 424.1 480 62.3
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 9.0e-116 422.2 480 62.1
Sabra05G0074700 Salix brachista HOM05D007202 ORTHO05D009125 1.2e-115 421.8 464 63.6
Potri.005G090600 Populus trichocarpa HOM05D007202 ORTHO05D009125 1.5e-115 421.4 465 64.3
Eucgr.J00877 Eucalyptus grandis HOM05D007202 ORTHO05D009125 1.7e-114 417.9 443 63.4
Thecc.02G157500 Theobroma cacao HOM05D007202 ORTHO05D009125 5.0e-114 416.4 496 60.9
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 1.9e-113 414.5 459 62.1
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 4.2e-113 413.3 473 59.4
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 1.2e-112 411.8 497 60.0
CANSAT54G1393 Cannabis sativa HOM05D007202 ORTHO05D009125 4.6e-112 409.8 481 60.7
Sed0015759 Sechium edule HOM05D007202 ORTHO05D009125 8.2e-109 399.1 498 58.6
CsaV3_5G014410 Cucumis sativus L. HOM05D007202 ORTHO05D009125 3.1e-108 397.1 499 58.5
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 5.3e-108 396.4 466 58.8
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 4.5e-107 393.3 466 58.2
Hund26048 Selenicereus undatus HOM05D007202 ORTHO05D009125 7.7e-107 392.5 454 59.3
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 6.5e-106 389.4 465 57.4
THA.LOC104800801 Tarenaya hassleriana HOM05D007202 ORTHO05D009125 1.4e-105 388.3 458 59.0
Aa31LG3G18260 Aethionema arabicum HOM05D007202 ORTHO05D009766 7.9e-104 382.5 444 60.8
Cc07_g16390 Coffea canephora HOM05D007202 ORTHO05D009125 1.8e-103 381.3 466 58.6
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 1.8e-103 381.3 446 60.3
Sp6g34640 Schrenkiella parvula HOM05D007202 ORTHO05D009125 6.7e-103 379.4 456 58.6
AL6G18720 Arabidopsis lyrata HOM05D007202 ORTHO05D009125 2.2e-101 374.4 474 57.2
AT5G08310 Arabidopsis thaliana HOM05D007202 ORTHO05D009125 3.7e-101 373.6 456 57.9
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 4.8e-101 373.2 489 55.0
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 8.2e-101 372.5 427 62.5
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 1.5e-99 368.2 493 56.8
CARHR204810 Cardamine hirsuta HOM05D007202 ORTHO05D009125 1.0e-98 365.5 456 55.3
Carub.0006s0720 Capsella rubella HOM05D007202 ORTHO05D009125 1.7e-98 364.8 456 56.4
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 8.5e-98 362.5 435 59.3
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 8.5e-98 362.5 489 50.9
Solyc04g009220.2 Solanum lycopersicum HOM05D007202 ORTHO05D009125 1.4e-97 361.7 435 59.3
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 1.9e-97 361.3 441 56.5
Sopen04g004350 Solanum pennellii HOM05D007202 ORTHO05D009125 2.5e-97 360.9 503 53.1
BolC9t59607H Brassica oleracea HOM05D007202 ORTHO05D009125 3.2e-97 360.5 456 56.1
Thhalv10015588m.g Eutrema salsugineum HOM05D007202 ORTHO05D009125 3.2e-97 360.5 454 56.4
Hma1.2p1_2428F.1_g321970 Hydrangea macrophylla HOM05D007202 ORTHO05D009125 5.5e-97 359.8 460 58.0
PGSC0003DMG400032545 Solanum tuberosum HOM05D007202 ORTHO05D009125 1.2e-96 358.6 490 55.3
Lj5g0012863 Lotus japonicus HOM05D007202 ORTHO05D009125 1.0e-95 355.5 438 59.6
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 3.9e-95 353.6 437 60.2
Glyma.20G104200 Glycine max HOM05D007202 ORTHO05D009125 8.8e-95 352.4 455 57.1
FAN07G0522 Fragaria x ananassa HOM05D007202 ORTHO05D009125 1.1e-94 352.1 495 55.4
BraA10t44884Z Brassica rapa HOM05D007202 ORTHO05D009125 1.5e-94 351.7 455 54.5
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 4.4e-94 350.1 458 55.0
CAN.G619.3 Capsicum annuum HOM05D007202 ORTHO05D009125 5.7e-94 349.7 466 55.2
Phvul.007G015700 Phaseolus vulgaris HOM05D007202 ORTHO05D009125 9.7e-94 349.0 448 56.9
Migut.I00254 Erythranthe guttata HOM05D007202 ORTHO05D009125 4.8e-93 346.7 462 48.9
C09p68630 Brassica napus HOM05D007202 ORTHO05D009125 2.0e-91 341.3 457 54.9
Aqoxy6G00861 Aquilegia oxysepala HOM05D007202 ORTHO05D009125 3.5e-91 340.5 475 53.7
VMungo0720G1420 Vigna mungo HOM05D007202 ORTHO05D009125 9.4e-89 332.4 439 56.0
A10p28370 Brassica napus HOM05D007202 ORTHO05D009125 1.2e-88 332.0 454 52.6
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 3.6e-88 330.5 514 52.1
HanXRQChr13g0392131 Helianthus annuus HOM05D007202 ORTHO05D009125 2.3e-87 327.8 450 55.6
SGA_v2.0_scaffold102G29846 Striga asiatica HOM05D007202 ORTHO05D009125 1.5e-86 325.1 429 50.1
Oeu037581.1 Olea europaea HOM05D007202 ORTHO05D009125 7.5e-86 322.8 389 54.0
FvH4_4g11722 Fragaria vesca HOM05D007202 ORTHO05D009125 6.3e-85 319.7 337 68.5
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 2.0e-83 314.7 478 51.0
SalBow5G0881 Salvia bowleyana HOM05D007202 ORTHO05D009125 2.0e-83 314.7 469 47.1
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 5.9e-83 313.2 446 53.6
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 1.7e-82 311.6 425 42.4
Ca_11225_v3 Cicer arietinum L. HOM05D007202 ORTHO05D009125 1.5e-81 308.5 445 44.9
Medtr1g114190 Medicago truncatula HOM05D000730 ORTHO05D009125 1.5e-81 308.5 431 46.6
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 1.6e-80 305.1 429 46.2
Nitab4.5_0006691g0020 Nicotiana tabacum HOM05D007202 ORTHO05D009125 2.8e-77 294.3 367 62.4
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.2e-69 268.1 451 49.7
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 6.3e-69 266.5 445 51.7
MSTRG.22930 Avicennia marina HOM05D007202 ORTHO05D009125 1.8e-68 265.0 411 47.2
HPP92_022482 Vanilla planifolia HOM05D007202 ORTHO05D009125 4.5e-67 260.4 482 47.7
ECA233G0992 Erigeron canadensis HOM05D000200 ORTHO05D001546 2.9e-66 257.7 416 51.2
Peaxi162Scf00681g00018 Petunia axillaris HOM05D007202 ORTHO05D009125 2.5e-65 254.6 369 58.5
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.7e-61 241.9 497 45.9
Nitab4.5_0009973g0040 Nicotiana tabacum HOM05D007202 ORTHO05D009125 2.2e-61 241.5 308 65.6
SalBow5G3041 Salvia bowleyana HOM05D007202 ORTHO05D009125 1.6e-59 235.3 367 48.2
ATR0712G074 Amborella trichopoda HOM05D007202 ORTHO05D009125 1.0e-58 232.6 459 34.0
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 3.0e-58 231.1 450 46.9
ClCG01G011360 Citrullus lanatus HOM05D007202 ORTHO05D009125 2.2e-53 214.9 271 62.7
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 8.1e-40 169.9 161 52.2
BcaC03g13219 Brassica carinata HOM05D007202 ORTHO05D009125 1.7e-37 162.2 152 52.0
unitig_26.g9680 Utricularia gibba HOM05D007202 ORTHO05D009125 8.1e-32 143.3 245 37.1
Zm00001eb009120 Zea mays HOM05D007202 ORTHO05D009125 4.0e-31 141.0 432 42.4
QL03p045855 Quercus lobata HOM05D007202 ORTHO05D009125 1.3e-24 119.4 127 52.0
CsaV3_5G014430 Cucumis sativus L. HOM05D007202 ORTHO05D009125 2.6e-22 111.7 124 46.8
CAN.G298.25 Capsicum annuum HOM05D007202 ORTHO05D009125 2.2e-21 108.6 312 42.3
COL.COLO4_33057 Corchorus olitorius HOM05D007202 ORTHO05D009125 2.3e-18 98.6 125 47.2
Dinv07880 Davidia involucrata HOM05D007202 ORTHO05D009125 3.0e-18 98.2 116 45.7
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 3.0e-10 71.6 179 30.7
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 8.7e-10 70.1 241 26.6
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 8.7e-10 70.1 180 29.4
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 8.7e-10 70.1 198 26.8
ATR0315G083 Amborella trichopoda HOM05D006749 ORTHO05D008352 1.5e-09 69.3 197 26.9
Ca_27130_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 1.5e-09 69.3 183 30.6
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 1.9e-09 68.9 241 26.1
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 1.9e-09 68.9 235 26.0
Prupe.1G081100 Prunus persica HOM05D007202 ORTHO05D009125 1.9e-09 68.9 76 53.9
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 5.6e-09 67.4 178 29.2
ClCG07G015540 Citrullus lanatus HOM05D008684 ORTHO05D010796 7.4e-09 67.0 244 26.2
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 9.6e-09 66.6 176 28.4
AT3G16010 Arabidopsis thaliana HOM05D006749 ORTHO05D008352 9.6e-09 66.6 241 25.7
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 9.6e-09 66.6 157 29.9
AL3G28660 Arabidopsis lyrata HOM05D006749 ORTHO05D008352 1.6e-08 65.9 241 26.1
CARHR091140 Cardamine hirsuta HOM05D006749 ORTHO05D008352 1.6e-08 65.9 241 25.7
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 1.6e-08 65.9 242 25.6
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 1.6e-08 65.9 220 28.2
TPR.G37535 Trifolium pratense HOM05D002460 ORTHO05D002716 2.1e-08 65.5 184 28.3
Haze_14074 Corylus avellana HOM05D002460 ORTHO05D002716 2.8e-08 65.1 227 23.3
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 3.7e-08 64.7 210 26.7
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 4.8e-08 64.3 177 28.8
SHI12026 Sapria himalayana HOM05D000424 ORTHO05D000355 4.8e-08 64.3 160 28.8
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 8.2e-08 63.5 193 27.5
BcaB04g18873 Brassica carinata HOM05D006749 ORTHO05D008352 1.1e-07 63.2 200 27.5
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.4e-07 62.8 177 28.2
RcHm_v2.0_Chr7g0215971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.4e-07 62.8 179 29.6
BcaC01g03842 Brassica carinata HOM05D006749 ORTHO05D008352 1.8e-07 62.4 199 25.6
C03p48040 Brassica napus HOM05D006749 ORTHO05D008352 1.8e-07 62.4 199 25.6
BolC3t17083H Brassica oleracea HOM05D006749 ORTHO05D008352 1.8e-07 62.4 199 25.6
PGSC0003DMG400031380 Solanum tuberosum HOM05D006749 ORTHO05D008352 3.1e-07 61.6 199 24.1
Aqoxy1G00580 Aquilegia oxysepala HOM05D007202 ORTHO05D026583 5.3e-07 60.8 204 25.0
Glyma.17G084400 Glycine max HOM05D002460 ORTHO05D002716 6.9e-07 60.5 184 26.6
Rhsim08G0188000 Rhododendron simsii HOM05D007173 ORTHO05D009151 6.9e-07 60.5 274 24.1
AagrBONN_evm.TU.Sc2ySwM_344.464 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-07 60.1 133 28.6
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 9.0e-07 60.1 234 25.6
CARHR076470 Cardamine hirsuta HOM05D002460 ORTHO05D002716 1.2e-06 59.7 252 22.6
RcHm_v2.0_Chr7g0216001 Rosa chinensis HOM05D000424 ORTHO05D000355 1.5e-06 59.3 168 28.0
Sp3g01530 Schrenkiella parvula HOM05D002460 ORTHO05D002716 1.5e-06 59.3 252 20.6
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 1.5e-06 59.3 100 34.0
VMungo1080G0367 Vigna mungo HOM05D006749 ORTHO05D008352 1.5e-06 59.3 154 26.0
AL3G11810 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 2.0e-06 58.9 252 23.0
AT3G02490 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 2.6e-06 58.5 253 22.9
arahy.Tifrunner.gnm1.ann1.X4ZK77 Arachis hypogaea HOM05D002460 ORTHO05D002716 2.6e-06 58.5 209 24.9
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 2.6e-06 58.5 230 26.1
AagrBONN_evm.TU.Sc2ySwM_368.3276 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-06 58.2 130 26.9
VMungo1215G0531 Vigna mungo HOM05D002460 ORTHO05D002716 3.4e-06 58.2 190 26.8
MD05G1026300 Malus domestica HOM05D000424 ORTHO05D000355 4.5e-06 57.8 179 28.5
Medtr4g104790 Medicago truncatula HOM05D002460 ORTHO05D002716 4.5e-06 57.8 188 27.7
Solyc12g043100.2 Solanum lycopersicum HOM05D006749 ORTHO05D008352 4.5e-06 57.8 199 23.6
Sopen12g022350 Solanum pennellii HOM05D006749 ORTHO05D008352 4.5e-06 57.8 199 23.6
AagrBONN_evm.TU.Sc2ySwM_228.4503 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 57.4 131 25.2
AagrBONN_evm.TU.Sc2ySwM_228.796 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 57.4 130 26.2
Thecc.01G407600 Theobroma cacao HOM05D001779 ORTHO05D001753 5.8e-06 57.4 183 25.7
AagrBONN_evm.TU.Sc2ySwM_368.2106 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-06 57.0 119 26.1
AagrBONN_evm.TU.Sc2ySwM_369.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-06 57.0 132 25.0
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 7.6e-06 57.0 181 27.1
AagrBONN_evm.TU.Sc2ySwM_228.1071 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-05 56.6 130 25.4
AagrBONN_evm.TU.Sc2ySwM_228.4233 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-05 56.6 132 25.0
AagrBONN_evm.TU.Sc2ySwM_368.653 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-05 56.6 130 25.4
Phvul.003G205300 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 1.0e-05 56.6 175 26.9


User provided reference genes

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