Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 0.0e+00 1237.2 657 100.0
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 2.7e-214 749.2 683 64.0
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 1.0e-189 667.5 694 60.8
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.2e-177 627.5 687 58.2
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.2e-177 627.5 687 58.2
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.4e-175 620.5 692 57.2
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 7.6e-169 598.2 690 57.0
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 5.5e-167 592.0 553 64.2
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 2.0e-161 573.5 707 51.8
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.3e-157 560.8 708 51.7
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 3.9e-157 559.3 703 49.2
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 5.7e-156 555.4 703 49.2
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 7.9e-150 535.0 688 53.5
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 2.7e-142 510.0 657 48.7
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.3e-141 506.9 691 47.6
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 4.7e-118 429.5 660 43.6
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.4e-117 427.9 679 44.8
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.0e-116 424.1 699 44.5
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 8.3e-115 418.7 630 47.6
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 2.3e-112 410.6 696 43.4
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 9.5e-111 405.2 683 43.6
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.3e-107 394.8 654 43.1
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 1.7e-104 384.4 668 43.3
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 2.5e-103 380.6 658 41.9
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 2.8e-102 377.1 658 41.5
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 1.4e-101 374.8 665 42.7
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 8.9e-101 372.1 644 42.1
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 2.2e-99 367.5 708 40.4
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 3.7e-99 366.7 664 40.2
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 6.4e-99 365.9 670 41.8
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 8.3e-99 365.5 681 41.3
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 7.0e-98 362.5 658 40.7
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 2.7e-97 360.5 670 40.7
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 3.5e-97 360.1 647 41.4
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 1.7e-96 357.8 659 41.0
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 2.8e-94 350.5 683 40.4
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 3.1e-93 347.1 591 44.0
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 4.0e-93 346.7 659 40.5
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 2.6e-92 344.0 659 40.4
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 9.9e-92 342.0 646 39.8
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.1e-90 338.6 623 42.2
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.6e-89 334.7 676 39.6
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 3.0e-88 330.5 588 41.5
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 5.1e-88 329.7 585 42.9
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 7.3e-87 325.9 664 38.9
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 3.6e-86 323.6 680 39.3
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 6.2e-86 322.8 664 38.7
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 6.8e-85 319.3 652 39.3
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 1.2e-84 318.5 668 38.3
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 2.6e-84 317.4 657 37.6
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.7e-83 314.7 695 35.3
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 6.4e-83 312.8 372 54.3
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 8.4e-83 312.4 566 38.5
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.7e-80 304.7 647 36.8
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 3.0e-80 303.9 475 42.5
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 2.8e-78 297.4 671 36.1
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.4e-74 285.0 585 36.9
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 7.1e-74 282.7 643 37.5
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 6.6e-72 276.2 677 36.8
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 1.1e-71 275.4 650 35.5
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.3e-70 271.9 475 42.1
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 9.0e-69 265.8 645 36.7
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 3.4e-68 263.8 554 38.1
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 5.8e-68 263.1 638 35.9
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 3.8e-67 260.4 681 35.7
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.9e-66 258.1 680 34.7
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 3.7e-62 243.8 640 34.8
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 9.9e-60 235.7 646 34.4
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 7.1e-58 229.6 646 33.0
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.6e-57 228.4 597 35.2
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 6.0e-57 226.5 496 34.9
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 1.3e-56 225.3 457 35.7
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.5e-55 221.1 602 33.7
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.3e-55 220.7 607 34.6
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 4.3e-55 220.3 669 31.7
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 7.4e-55 219.5 600 34.0
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 2.8e-54 217.6 660 32.3
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 1.8e-53 214.9 638 33.7
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 4.0e-53 213.8 663 31.4
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 1.5e-52 211.8 665 31.9
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 4.5e-52 210.3 480 35.8
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 7.6e-52 209.5 721 31.1
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 8.7e-48 196.1 629 31.5
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 2.2e-43 181.4 502 32.3
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 5.0e-43 180.3 609 31.4
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 8.5e-43 179.5 274 43.1
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 8.5e-43 179.5 455 32.7
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.4e-40 172.2 681 29.4
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.5e-39 168.7 612 32.5
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 9.7e-39 166.0 610 31.1
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 1.4e-37 162.2 662 29.9
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 4.1e-37 160.6 862 26.0
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.0e-35 156.0 604 28.8
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 1.0e-35 156.0 586 31.1
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 2.2e-35 154.8 542 32.3
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 2.5e-34 151.4 487 30.0
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 4.1e-29 134.0 416 32.5
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 5.0e-27 127.1 654 27.2
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 5.7e-23 113.6 511 28.8
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 4.5e-20 104.0 676 25.4
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 5.5e-18 97.1 682 24.8
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 3.0e-16 91.3 481 29.9
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 2.6e-15 88.2 297 30.3
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 1.7e-14 85.5 665 25.4
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 1.2e-12 79.3 388 26.3
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 2.5e-10 71.6 189 34.4
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 8.8e-08 63.2 148 33.8


User provided reference genes

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