Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 5.6e-59 231.1 149 100.0
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 8.4e-23 110.9 147 61.2
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 9.3e-22 107.5 149 66.4
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 5.6e-19 98.2 143 59.4
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 4.5e-16 88.6 116 61.2
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 2.2e-15 86.3 116 57.8
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 2.2e-15 86.3 145 49.7
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 4.9e-15 85.1 143 57.3
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 8.4e-15 84.3 116 61.2
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.4e-14 83.6 118 55.9
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.9e-14 83.2 115 54.8
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 4.2e-14 82.0 145 48.3
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 7.1e-14 81.3 145 42.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 1.6e-13 80.1 145 44.1
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 2.1e-13 79.7 84 72.6
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 2.7e-13 79.3 118 50.0
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 2.7e-13 79.3 145 45.5
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.0e-12 77.4 148 54.1
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.0e-12 77.4 146 47.3
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.3e-12 77.0 118 43.2
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 1.8e-12 76.6 150 56.0
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.8e-12 76.6 108 56.5
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 2.3e-12 76.3 85 67.1
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.0e-12 75.9 76 76.3
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 3.9e-12 75.5 149 41.6
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 5.1e-12 75.1 148 45.3
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 6.7e-12 74.7 84 71.4
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.5e-11 73.6 114 52.6
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 2.5e-11 72.8 138 49.3
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 5.6e-11 71.6 82 64.6
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 7.4e-11 71.2 84 59.5
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 7.4e-11 71.2 82 65.9
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 9.6e-11 70.9 89 60.7
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 9.6e-11 70.9 89 60.7
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 9.6e-11 70.9 81 69.1
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 9.6e-11 70.9 86 60.5
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.3e-10 70.5 143 37.1
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.6e-10 70.1 81 67.9
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.6e-10 70.1 82 59.8
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 2.8e-10 69.3 84 65.5
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 3.7e-10 68.9 83 66.3
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 3.7e-10 68.9 82 61.0
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.8e-10 68.6 92 59.8
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.8e-10 68.6 92 59.8
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 4.8e-10 68.6 92 59.8
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 4.8e-10 68.6 83 65.1
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 6.2e-10 68.2 86 61.6
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 6.2e-10 68.2 118 47.5
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 6.2e-10 68.2 106 55.7
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 6.2e-10 68.2 90 62.2
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 8.1e-10 67.8 118 47.5
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 8.1e-10 67.8 77 51.9
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-09 67.0 89 59.6
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.4e-09 67.0 84 63.1
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 1.4e-09 67.0 84 66.7
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 2.4e-09 66.2 81 59.3
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 2.4e-09 66.2 79 60.8
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 3.1e-09 65.9 89 59.6
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.0e-09 65.5 82 64.6
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 4.0e-09 65.5 88 52.3
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 4.0e-09 65.5 89 59.6
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 4.0e-09 65.5 83 63.9
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 6.9e-09 64.7 86 62.8
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 9.0e-09 64.3 114 52.6
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 9.0e-09 64.3 87 62.1
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 9.0e-09 64.3 81 59.3
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 1.2e-08 63.9 88 61.4
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.2e-08 63.9 117 53.0
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.2e-08 63.9 140 42.9
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 2.0e-08 63.2 87 60.9
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 2.0e-08 63.2 78 66.7
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 2.6e-08 62.8 79 57.0
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 2.6e-08 62.8 114 52.6
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 3.4e-08 62.4 112 41.1
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 3.4e-08 62.4 78 59.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 4.5e-08 62.0 88 61.4
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 4.5e-08 62.0 88 61.4
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 5.8e-08 61.6 115 49.6
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 5.8e-08 61.6 45 73.3
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 5.8e-08 61.6 94 46.8
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 7.6e-08 61.2 106 52.8
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 9.9e-08 60.8 82 54.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.3e-07 60.5 72 51.4
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 2.2e-07 59.7 84 61.9
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 2.9e-07 59.3 76 63.2
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 2.9e-07 59.3 86 57.0
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 2.9e-07 59.3 76 67.1
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 4.9e-07 58.5 91 58.2
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 6.4e-07 58.2 43 79.1
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 8.4e-07 57.8 46 67.4
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.1e-06 57.4 39 76.9
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 1.4e-06 57.0 35 82.9
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 2.4e-06 56.2 84 59.5
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 2.4e-06 56.2 45 64.4
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 5.5e-06 55.1 80 56.2


User provided reference genes

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