Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 7.1e-110 401.0 260 100.0
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 5.5e-62 241.9 261 70.1
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 3.6e-61 239.2 261 70.9
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 4.6e-61 238.8 261 70.9
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 4.4e-59 232.3 261 65.1
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 3.7e-58 229.2 261 69.3
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 5.0e-55 218.8 261 65.5
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.9e-54 216.9 264 52.3
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 5.2e-44 182.2 261 55.9
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 8.8e-44 181.4 261 55.2
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 2.8e-42 176.4 263 44.1
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.4e-41 174.1 263 41.4
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 2.4e-41 173.3 262 39.7
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.2e-40 171.0 260 54.2
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 4.5e-40 169.1 261 46.0
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 5.9e-40 168.7 263 41.8
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 7.7e-40 168.3 261 46.0
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 7.7e-40 168.3 264 50.4
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 7.7e-40 168.3 263 42.6
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 1.0e-39 167.9 264 42.0
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 3.8e-39 166.0 261 54.8
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 5.0e-39 165.6 261 57.5
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.5e-38 164.1 263 46.8
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.5e-38 164.1 264 42.0
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 1.8e-36 157.1 262 40.8
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.0e-35 153.7 260 41.9
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 2.6e-35 153.3 265 41.9
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 2.6e-35 153.3 311 44.1
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.8e-34 149.8 304 44.4
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 2.8e-34 149.8 239 41.0
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 4.8e-34 149.1 259 37.8
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 6.3e-34 148.7 263 39.9
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 8.3e-34 148.3 273 49.8
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 8.3e-34 148.3 257 41.2
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.4e-33 147.5 263 40.7
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.8e-33 147.1 259 38.2
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 2.4e-33 146.7 261 44.8
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 4.1e-33 146.0 278 38.5
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 5.4e-33 145.6 260 40.0
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 9.1e-33 144.8 263 47.5
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 2.0e-32 143.7 266 44.7
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 2.7e-32 143.3 298 44.0
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.7e-32 143.3 273 39.9
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 7.7e-32 141.7 256 40.6
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.0e-31 141.4 266 41.4
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 1.7e-31 140.6 263 39.5
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 2.3e-31 140.2 265 37.7
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 3.8e-31 139.4 311 42.8
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 5.0e-31 139.0 265 40.8
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.1e-30 137.9 267 40.8
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.9e-30 137.1 263 44.5
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.9e-30 137.1 263 44.5
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 9.5e-30 134.8 250 49.6
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.6e-29 132.9 263 44.9
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 1.0e-28 131.3 264 48.9
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 1.4e-28 131.0 288 35.8
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.8e-28 130.6 307 40.4
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.8e-28 130.6 261 36.8
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.0e-28 129.4 297 32.7
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.0e-28 129.4 271 48.0
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 1.2e-27 127.9 262 41.2
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 2.0e-27 127.1 281 35.9
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 3.4e-27 126.3 303 32.3
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.4e-27 125.9 299 32.4
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 3.7e-26 122.9 261 46.4
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.1e-25 121.3 266 38.0
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 1.8e-25 120.6 314 30.3
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 3.1e-25 119.8 249 34.1
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 5.4e-25 119.0 294 40.5
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 9.2e-25 118.2 305 33.4
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 9.2e-25 118.2 286 33.2
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 9.2e-25 118.2 306 38.9
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 2.7e-24 116.7 261 33.0
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 4.5e-24 115.9 264 34.8
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 4.5e-24 115.9 302 39.1
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.9e-24 115.5 264 31.8
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 7.8e-24 115.2 209 39.7
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.7e-23 114.0 265 35.8
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 5.0e-23 112.5 304 31.6
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 6.6e-23 112.1 291 31.6
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.1e-22 111.3 300 39.7
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 2.5e-22 110.2 309 31.4
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 4.3e-22 109.4 305 31.8
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 5.6e-22 109.0 207 44.9
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 7.3e-22 108.6 265 32.8
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 7.3e-22 108.6 302 39.7
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 7.3e-22 108.6 304 31.2
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 1.6e-21 107.5 263 34.6
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.6e-21 107.5 271 43.5
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 2.1e-21 107.1 292 40.8
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 3.6e-21 106.3 279 31.2
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 4.7e-21 105.9 296 31.8
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 6.1e-21 105.5 312 30.1
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 1.4e-20 104.4 209 38.3
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 1.4e-20 104.4 304 30.6
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.8e-20 104.0 296 31.4
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.8e-20 104.0 305 31.5
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.3e-20 103.6 97 58.8
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.3e-20 103.6 97 58.8
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 5.2e-20 102.4 123 48.8
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 6.8e-20 102.1 309 28.8
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 6.8e-20 102.1 206 47.1
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.2e-19 101.3 245 34.3
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 2.6e-19 100.1 302 31.5
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 3.4e-19 99.8 242 33.5
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 7.5e-19 98.6 242 33.5
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 7.5e-19 98.6 360 33.1
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 7.5e-19 98.6 360 33.1
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 2.9e-18 96.7 268 34.3
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 6.4e-18 95.5 254 33.9
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 6.4e-18 95.5 286 28.7
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 8.3e-18 95.1 206 33.5
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 8.3e-18 95.1 260 31.2
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 1.4e-17 94.4 242 32.2
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 1.4e-17 94.4 242 32.2
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.4e-17 94.4 64 68.8
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.8e-17 94.0 249 33.7
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 4.1e-17 92.8 270 33.0
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 5.4e-17 92.4 195 34.4
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 5.4e-17 92.4 242 33.5
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 5.4e-17 92.4 251 43.0
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-16 90.9 247 31.2
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 3.5e-16 89.7 251 31.1
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 4.6e-16 89.4 248 31.0
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 6.0e-16 89.0 247 31.6
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 1.0e-15 88.2 246 31.7
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 1.0e-15 88.2 252 30.2
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 1.0e-15 88.2 252 30.2
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 1.3e-15 87.8 267 28.5
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 2.3e-15 87.0 245 29.8
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 2.3e-15 87.0 245 29.8
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 2.3e-15 87.0 245 29.8
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 3.0e-15 86.7 128 46.1
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 1.1e-14 84.7 269 32.0
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 1.5e-14 84.3 266 31.6
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 1.5e-14 84.3 71 64.8
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 1.9e-14 84.0 246 31.7
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 7.3e-14 82.0 250 33.2
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-13 80.9 245 30.2
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.6e-13 80.9 245 30.2
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 3.6e-13 79.7 250 32.8
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 6.2e-13 79.0 258 29.8
Nn8g39944 Nelumbo nucifera HOM05D003759 ORTHO05D004149 6.2e-13 79.0 65 61.5
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 8.0e-13 78.6 250 32.4
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 1.8e-12 77.4 241 28.6
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 1.8e-12 77.4 241 28.6
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 3.1e-12 76.6 241 32.0
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 4.0e-12 76.3 304 26.3
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 6.8e-12 75.5 243 28.0
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 6.8e-12 75.5 243 28.0
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 8.9e-12 75.1 241 28.2
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 2.0e-11 73.9 271 29.2
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 3.4e-11 73.2 211 32.7
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 4.4e-11 72.8 122 38.5
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 5.8e-11 72.4 242 27.7
ECA240G4545 Erigeron canadensis HOM05D003759 ORTHO05D004149 5.8e-11 72.4 264 27.7
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 5.8e-11 72.4 143 34.3
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 1.7e-10 70.9 269 28.3
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.9e-10 70.1 76 48.7
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 2.9e-10 70.1 248 28.6
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 2.9e-10 70.1 83 48.2
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.9e-09 67.4 208 34.6
HanXRQChr09g0244571 Helianthus annuus HOM05D003759 ORTHO05D004149 5.4e-09 65.9 85 50.6
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 1.2e-08 64.7 76 50.0
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.6e-08 64.3 212 31.1
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 1.6e-08 64.3 267 29.6
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 2.1e-08 63.9 273 27.5
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 2.7e-08 63.5 80 43.8
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 3.5e-08 63.2 204 30.4
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 6.0e-08 62.4 249 27.3
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 6.0e-08 62.4 250 28.0
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 1.0e-07 61.6 209 27.8
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 2.3e-07 60.5 206 29.6
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 3.0e-07 60.1 264 26.5
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 3.9e-07 59.7 248 26.6
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 7.3e-06 55.5 105 31.4


User provided reference genes

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