Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 2.0e-101 372.5 195 100.0
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 3.8e-68 261.9 193 75.6
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 2.0e-64 249.6 193 73.1
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.6e-64 249.2 194 73.2
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 2.9e-63 245.7 195 71.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.7e-63 245.4 195 72.3
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 2.4e-62 242.7 184 74.5
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.4e-62 242.7 195 70.8
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.1e-62 241.9 189 72.5
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 4.1e-62 241.9 170 75.9
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 4.1e-62 241.9 195 71.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 5.4e-62 241.5 194 69.6
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 9.2e-62 240.7 194 69.6
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.2e-61 240.4 195 70.3
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 1.6e-61 240.0 193 72.5
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 2.0e-61 239.6 194 69.1
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.0e-61 239.6 192 71.9
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.7e-61 239.2 194 70.6
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 5.9e-61 238.0 142 86.6
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.0e-60 237.3 167 77.2
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.7e-60 236.5 195 71.8
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.7e-60 236.5 195 71.8
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 1.7e-60 236.5 195 71.3
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.3e-60 236.1 191 71.2
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.0e-60 235.7 168 76.2
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.9e-60 235.3 195 68.2
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 8.6e-60 234.2 195 69.2
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.5e-59 233.4 192 68.8
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.3e-59 232.3 195 69.2
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 5.6e-59 231.5 192 68.8
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.6e-59 231.5 194 69.6
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.6e-59 231.5 194 69.6
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 7.3e-59 231.1 176 73.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 9.5e-59 230.7 158 79.7
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.2e-58 230.3 193 68.4
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.6e-58 229.9 196 68.9
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.6e-58 229.9 195 69.2
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-58 229.6 172 75.6
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 2.8e-58 229.2 196 68.9
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.8e-58 229.2 195 69.2
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.6e-58 228.8 193 67.4
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 8.0e-58 227.6 195 66.2
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.0e-58 227.6 193 68.4
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 8.0e-58 227.6 195 67.2
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.4e-57 226.9 194 68.6
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 1.8e-57 226.5 136 87.5
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 2.3e-57 226.1 194 67.0
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.3e-57 226.1 192 67.7
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 3.1e-57 225.7 193 67.4
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 3.1e-57 225.7 197 67.0
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.1e-57 225.7 138 84.8
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 3.1e-57 225.7 150 80.0
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 8.9e-57 224.2 173 71.1
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.2e-56 223.8 139 83.5
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 1.5e-56 223.4 191 66.5
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 154 77.3
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.6e-56 222.6 154 76.6
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 2.6e-56 222.6 194 67.5
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.6e-56 222.6 156 77.6
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.6e-56 222.6 134 87.3
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.4e-56 222.2 192 67.2
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 5.8e-56 221.5 155 76.1
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 9.8e-56 220.7 195 66.7
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 2.2e-55 219.5 191 65.4
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 3.7e-55 218.8 194 66.5
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.1e-54 217.2 199 63.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.4e-54 216.9 199 63.8
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.4e-54 216.9 167 71.9
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-54 216.9 138 81.9
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.9e-54 216.5 166 74.7
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 2.4e-54 216.1 199 63.8
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.2e-54 215.7 158 72.8
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 7.0e-54 214.5 165 70.3
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.0e-54 214.5 199 65.3
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 9.2e-54 214.2 201 64.7
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.2e-53 213.8 176 70.5
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 1.2e-53 213.8 194 65.5
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-53 213.4 135 83.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.6e-53 213.4 162 71.6
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.6e-53 213.4 137 82.5
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 1.6e-53 213.4 134 85.1
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 2.0e-53 213.0 199 64.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 2.7e-53 212.6 136 83.8
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.5e-53 212.2 162 74.1
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.5e-53 212.2 191 64.4
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 4.6e-53 211.8 194 65.5
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.6e-53 211.8 199 64.8
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 4.6e-53 211.8 195 64.6
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 4.6e-53 211.8 135 84.4
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.6e-53 211.8 184 64.1
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.0e-53 211.5 195 66.7
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 6.0e-53 211.5 136 80.9
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 7.8e-53 211.1 162 73.5
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.0e-52 210.7 176 68.8
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.3e-52 210.3 166 70.5
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 162 73.5
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.7e-52 209.9 176 67.0
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.7e-52 209.9 155 76.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.3e-52 209.5 168 70.2
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.3e-52 209.5 134 80.6
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.3e-52 209.5 148 78.4
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.0e-52 209.1 201 65.2
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 6.6e-52 208.0 164 69.5
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.1e-51 207.2 135 80.0
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.1e-51 207.2 157 72.0
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.1e-51 207.2 142 79.6
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.5e-51 206.8 174 65.5
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.5e-51 206.8 194 63.4
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.9e-51 206.5 135 80.0
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-51 206.5 135 80.0
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-51 206.5 178 66.3
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 2.5e-51 206.1 178 66.3
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.5e-51 206.1 150 74.0
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 4.3e-51 205.3 175 65.7
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 4.3e-51 205.3 175 65.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 7.3e-51 204.5 142 78.2
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 1.6e-50 203.4 174 64.4
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.1e-50 203.0 190 63.2
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.8e-50 202.6 134 79.1
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 6.2e-50 201.4 110 94.5
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 2.3e-49 199.5 111 92.8
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 4.0e-49 198.7 139 79.1
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 8.9e-49 197.6 171 64.3
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.6e-48 196.1 170 70.0
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.4e-48 195.7 167 68.3
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 7.5e-48 194.5 110 90.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 9.9e-48 194.1 176 65.3
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.3e-47 193.7 193 61.1
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.2e-47 193.0 135 78.5
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 2.2e-47 193.0 192 61.5
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 2.4e-46 189.5 107 92.5
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.1e-46 188.7 110 88.2
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.1e-46 188.7 110 88.2
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.1e-45 186.4 142 75.4
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 2.7e-45 186.0 108 88.0
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 6.0e-45 184.9 136 71.3
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 3.9e-44 182.2 195 60.0
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.5e-43 180.3 111 86.5
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 9.5e-43 177.6 194 58.2
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 9.5e-43 177.6 145 67.6
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.1e-42 176.4 194 57.7
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.8e-42 176.0 112 78.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 4.7e-42 175.3 164 61.0
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.7e-42 175.3 138 69.6
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 2.4e-41 172.9 194 54.6
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.5e-40 170.2 199 56.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 8.4e-39 164.5 162 61.7
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.4e-38 163.7 139 60.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 7.1e-38 161.4 347 36.9
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 4.6e-37 158.7 102 80.4
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 3.0e-36 156.0 111 71.2
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 3.9e-36 155.6 135 61.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.9e-36 155.6 134 64.9
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.7e-34 148.7 163 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 4.7e-34 148.7 112 67.9
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.5e-27 126.3 131 61.8
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 3.6e-26 122.5 105 60.0
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 4.0e-25 119.0 77 79.2
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 3.4e-24 115.9 91 70.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.7e-23 113.6 85 71.8
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.2e-23 113.2 99 65.7
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-23 112.1 86 73.3
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 1.1e-22 110.9 127 49.6
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 3.2e-22 109.4 86 72.1
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 3.2e-22 109.4 86 72.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.1e-18 96.7 113 53.1
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.9e-12 75.9 44 88.6
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.3e-11 72.4 45 80.0
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.8e-10 69.7 45 80.0
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 1.4e-09 67.4 39 87.2
Lalb_Chr12g0198741 Lupinus albus HOM05D004106 ORTHO05D004381 1.9e-06 57.0 85 43.5


User provided reference genes

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