Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 7.4e-127 457.2 230 100.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.9e-123 445.3 230 96.5
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.4e-117 425.6 230 91.3
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-115 419.9 228 91.2
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.2e-115 419.1 228 91.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 8.4e-115 417.2 228 90.4
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-114 416.0 228 90.4
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 6.7e-112 407.5 217 93.5
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.4e-106 387.1 228 85.5
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.2e-105 386.7 230 83.9
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.1e-105 384.4 228 85.1
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.4e-104 383.3 230 81.3
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.8e-104 382.9 230 80.9
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.0e-104 382.1 230 81.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 8.8e-104 380.6 227 84.1
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.9e-103 379.4 231 81.8
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.7e-102 376.3 221 83.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.3e-102 374.4 264 75.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.8e-101 372.9 228 79.4
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 9.1e-101 370.5 227 79.7
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 1.2e-100 370.2 230 80.4
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-100 370.2 230 80.9
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-99 366.7 226 81.4
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.7e-99 366.3 219 80.8
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.2e-99 365.9 220 83.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 5.0e-99 364.8 222 81.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 6.5e-99 364.4 226 78.3
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 6.5e-99 364.4 221 82.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 1.1e-98 363.6 227 79.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 7.2e-98 360.9 230 78.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 7.2e-98 360.9 226 79.6
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 226 79.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.7e-97 359.0 230 78.7
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 7.9e-97 357.5 226 77.9
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 7.9e-97 357.5 215 81.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.0e-96 357.1 230 78.3
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-96 356.3 227 74.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.0e-96 355.5 221 76.9
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.9e-96 355.1 230 74.3
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 3.9e-96 355.1 226 76.5
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 6.7e-96 354.4 230 73.5
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 6.7e-96 354.4 227 75.8
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 6.7e-96 354.4 230 74.3
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-95 353.6 218 77.5
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.1e-95 353.6 221 76.5
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 1.1e-95 353.6 217 79.7
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-95 352.4 223 74.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.6e-95 352.4 227 74.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.6e-95 352.4 226 76.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 3.3e-95 352.1 227 73.1
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.3e-95 352.1 230 73.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.3e-95 352.1 217 78.8
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.4e-95 351.7 227 74.4
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.4e-95 351.7 230 74.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.4e-95 351.7 226 75.7
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 5.7e-95 351.3 230 74.8
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 5.7e-95 351.3 228 78.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 5.7e-95 351.3 217 79.3
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 9.7e-95 350.5 223 74.9
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 9.7e-95 350.5 226 73.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.3e-94 350.1 223 73.5
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.3e-94 350.1 227 78.4
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.7e-94 349.7 230 73.5
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.7e-94 349.7 214 78.0
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.2e-94 349.4 230 73.0
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.8e-94 349.0 230 73.5
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 2.8e-94 349.0 227 74.0
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 3.7e-94 348.6 223 74.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.7e-94 348.6 230 73.9
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.7e-94 348.6 229 75.5
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 4.8e-94 348.2 221 75.6
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-93 347.1 224 73.2
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.4e-93 346.7 224 73.2
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 218 77.1
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 220 76.4
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 220 76.4
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 2.4e-93 345.9 227 74.4
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.1e-93 345.5 228 75.9
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 3.1e-93 345.5 218 76.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 4.1e-93 345.1 221 73.3
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 5.3e-93 344.7 224 72.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.3e-93 344.7 228 75.4
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 7.0e-93 344.4 228 75.0
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 7.0e-93 344.4 228 75.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.0e-93 344.4 218 76.6
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.1e-93 344.0 222 77.0
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.5e-92 343.2 215 76.3
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.5e-92 343.2 214 76.6
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.0e-92 342.8 218 74.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.0e-92 342.8 224 75.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.6e-92 342.4 227 75.3
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.5e-92 341.7 220 76.4
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 4.5e-92 341.7 214 77.1
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.0e-91 340.5 216 74.5
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.3e-91 340.1 212 78.8
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 2.9e-91 339.0 244 71.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 3.8e-91 338.6 218 74.3
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 8.5e-91 337.4 202 77.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.6e-89 333.2 227 74.4
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.6e-89 332.0 227 71.8
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 6.1e-89 331.3 219 72.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 6.7e-88 327.8 224 71.4
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.1e-87 327.0 227 70.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.5e-87 326.6 204 75.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.5e-87 326.6 205 74.6
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.0e-87 326.2 218 71.6
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 2.0e-87 326.2 212 74.5
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.6e-87 325.9 252 68.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.6e-87 325.9 222 69.4
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 2.6e-87 325.9 202 79.2
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 3.3e-87 325.5 206 74.3
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 4.4e-87 325.1 227 70.5
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 9.7e-87 323.9 200 76.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.8e-86 322.4 217 73.7
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-86 322.0 208 74.0
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.8e-86 321.6 224 70.1
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 8.2e-86 320.9 232 72.4
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 9.1e-85 317.4 201 75.6
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.5e-84 315.1 227 70.9
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 8.5e-83 310.8 195 76.9
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 8.5e-83 310.8 213 71.8
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.5e-83 310.8 202 74.3
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.2e-82 308.5 203 72.9
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.1e-81 306.2 213 71.4
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 7.5e-79 297.7 186 79.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.8e-78 295.0 194 74.7
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 5.3e-77 291.6 197 70.1
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.2e-76 290.4 216 67.6
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.6e-76 290.0 202 68.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.5e-76 288.5 213 69.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 5.9e-76 288.1 213 66.7
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.7e-76 287.7 211 66.8
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.5e-75 284.6 230 66.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 5.2e-72 275.0 226 62.8
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.8e-72 274.6 173 78.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 2.6e-71 272.7 215 65.6
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.7e-70 268.9 208 66.8
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.8e-70 268.5 228 65.8
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 8.6e-67 257.7 231 58.9
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 1.9e-66 256.5 227 59.5
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 4.2e-66 255.4 201 65.2
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 7.2e-66 254.6 159 78.0
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 8.0e-65 251.1 206 61.2
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.0e-64 248.8 213 62.0
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 5.2e-64 248.4 152 81.6
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-63 246.1 157 73.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.7e-62 243.4 196 62.8
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 4.1e-61 238.8 213 59.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 4.5e-60 235.3 211 57.3
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.2e-57 227.3 152 74.3
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.6e-57 226.9 215 55.8
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 8.0e-57 224.6 227 54.6
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.8e-56 223.4 186 63.4
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.1e-56 222.6 215 54.4
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.5e-52 209.1 211 51.2
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 6.0e-44 181.8 238 45.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.1e-42 177.6 198 53.0
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 8.1e-41 171.4 110 79.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.2e-40 168.7 239 43.5
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.3e-38 164.1 238 42.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.2e-38 163.3 123 70.7
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-36 156.8 109 68.8
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.5e-36 156.0 102 68.6
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 2.3e-35 153.3 94 79.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.5e-34 150.6 217 41.0
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 5.2e-32 142.1 79 83.5
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.4e-31 139.0 112 67.9
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 5.4e-29 132.1 83 78.3
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 4.6e-28 129.0 78 79.5
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 8.7e-27 124.8 157 42.0
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 9.0e-16 88.2 202 30.2
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.0e-15 87.0 73 60.3
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.5e-10 70.9 105 41.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 6.9e-08 62.0 74 50.0
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 1.2e-07 61.2 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 4.9e-06 55.8 71 42.3


User provided reference genes

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