Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 6.7e-105 384.0 195 100.0
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 3.3e-104 381.7 195 98.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-104 381.7 195 99.0
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 4.4e-104 381.3 195 98.5
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 5.7e-104 380.9 195 99.0
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 5.7e-104 380.9 195 99.0
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 9.7e-104 380.2 195 98.5
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.3e-103 379.8 195 98.5
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.3e-103 379.8 195 97.9
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.7e-103 379.4 195 98.5
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 2.2e-103 379.0 195 97.9
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.2e-103 379.0 195 98.5
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.8e-103 378.6 195 98.5
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.8e-103 378.6 195 99.0
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 2.8e-103 378.6 195 98.5
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 98.5
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 97.9
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 97.4
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 4.8e-103 377.9 195 97.9
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 97.4
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 6.3e-103 377.5 195 97.4
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 8.2e-103 377.1 195 97.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 96.9
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 97.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 97.4
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.1e-102 376.7 195 97.4
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 1.4e-102 376.3 195 96.4
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 97.4
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 2.4e-102 375.6 195 96.4
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 3.1e-102 375.2 193 97.4
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 96.9
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.1e-102 375.2 195 97.9
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 5.3e-102 374.4 195 96.4
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 96.4
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 97.4
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 6.9e-102 374.0 195 96.4
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.2e-101 373.2 195 95.4
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.5e-101 372.9 195 96.4
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 96.4
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 2.0e-101 372.5 195 95.9
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 95.9
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.6e-101 372.1 199 96.0
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 96.4
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.6e-101 372.1 195 95.4
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.4e-101 371.7 195 95.4
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 4.5e-101 371.3 195 95.4
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 7.7e-101 370.5 195 95.4
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.0e-100 370.2 195 94.9
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 95.4
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 195 95.4
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.9
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.2e-100 369.0 195 94.9
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 2.9e-100 368.6 195 94.9
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 3.8e-100 368.2 193 95.3
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.8e-100 368.2 193 95.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 3.8e-100 368.2 187 99.5
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.9
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 3.8e-100 368.2 193 95.3
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.8e-100 368.2 195 94.4
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 5.0e-100 367.9 195 94.9
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 6.5e-100 367.5 193 94.8
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 92.8
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 93.3
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 8.5e-100 367.1 195 93.3
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 1.1e-99 366.7 193 95.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.1e-99 366.7 195 93.8
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 93.3
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 2.5e-99 365.5 186 98.9
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.2e-99 365.2 189 96.3
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 94.4
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.8
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 92.3
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 7.2e-99 364.0 185 98.9
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.2e-98 363.2 189 96.3
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.2e-98 363.2 196 93.4
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.8
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.1e-98 362.5 187 96.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.1e-98 362.5 193 94.3
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 3.6e-98 361.7 185 97.8
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.6e-98 361.7 185 97.8
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.7e-98 361.3 185 98.4
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 4.7e-98 361.3 189 96.3
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 6.1e-98 360.9 185 96.8
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.7
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.4e-97 359.8 188 95.2
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 3.0e-97 358.6 186 96.2
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 6.7e-97 357.5 186 95.7
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.1e-96 356.7 187 95.2
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 2.0e-96 355.9 185 95.7
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 2.0e-96 355.9 185 95.7
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 2.0e-96 355.9 185 95.7
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 2.0e-96 355.9 186 95.7
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 3.3e-96 355.1 195 90.3
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 5.7e-96 354.4 185 95.7
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 5.7e-96 354.4 185 95.7
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 7.4e-96 354.0 218 84.9
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 1.7e-95 352.8 186 93.5
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.1e-94 350.1 186 93.0
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.0e-93 345.9 195 90.8
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 4.5e-93 344.7 216 82.9
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 7.7e-93 344.0 195 87.2
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.0e-92 341.3 226 79.2
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.1e-91 340.1 195 87.2
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.9e-91 339.3 195 88.7
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 8.0e-90 334.0 195 87.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.0e-88 329.3 195 87.2
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 2.8e-87 325.5 176 92.6
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 8.2e-87 323.9 195 80.5
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 3.1e-86 322.0 194 79.9
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.9e-83 312.8 195 85.1
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 7.2e-83 310.8 195 84.6
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 2.7e-82 308.9 195 83.6
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 2.7e-82 308.9 194 84.0
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.6e-80 302.4 195 82.1
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.3e-79 297.7 186 84.4
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.3e-79 297.7 186 84.4
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.1e-78 295.0 186 83.9
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 7.7e-77 290.8 150 98.7
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 2.3e-76 289.3 166 87.3
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.8e-73 277.7 195 73.8
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 7.8e-69 264.2 136 96.3
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.4e-63 244.6 142 84.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 3.2e-62 242.3 181 65.7
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 4.6e-61 238.4 124 96.0
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.3e-60 236.1 180 70.6
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-55 220.3 119 94.1
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 8.3e-55 217.6 123 88.6
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.4e-54 216.1 148 77.0
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 4.0e-49 198.7 186 62.4
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.2e-45 187.2 188 50.5
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 4.6e-45 185.3 93 100.0
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 8.6e-44 181.0 173 54.3
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 7.6e-40 167.9 83 98.8
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-39 167.2 123 73.2
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.6e-36 154.8 75 100.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.9e-35 153.3 75 98.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.1e-34 149.8 79 96.2
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.3e-28 130.6 70 94.3
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.0e-28 129.4 70 92.9
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 1.2e-21 107.5 58 87.9
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 6.0e-21 105.1 54 96.3
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.3e-18 97.4 109 54.1
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-18 95.9 109 52.3
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.6e-16 88.2 47 89.4
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.1e-14 84.3 52 75.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 5.5e-14 82.0 90 54.4
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 7.9e-13 78.2 41 95.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.0e-12 77.8 57 70.2
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 3.9e-12 75.9 46 84.8
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-11 72.8 43 83.7
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 3.3e-11 72.8 43 83.7
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 7.1e-06 55.1 69 43.5


User provided reference genes

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