Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.4e-173 612.1 304 100.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.1e-141 505.4 305 82.0
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 7.4e-135 484.2 305 80.0
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 9.7e-127 457.2 304 78.9
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 9.7e-127 457.2 306 77.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-125 453.8 299 77.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.5e-123 444.1 302 76.2
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 2.6e-119 432.6 289 73.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.3e-118 430.3 298 71.1
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.2e-118 429.5 298 70.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.8e-117 426.4 296 69.9
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.6e-116 423.3 292 71.2
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.0e-116 422.9 287 70.7
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.5e-116 421.8 302 68.5
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 8.5e-115 417.5 299 69.2
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 8.5e-115 417.5 301 68.1
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 7.2e-114 414.5 301 68.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.2e-113 413.7 275 71.6
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.2e-113 413.7 281 71.2
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.6e-113 413.3 274 71.5
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.6e-113 412.1 259 75.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 3.6e-113 412.1 283 70.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.7e-113 411.8 303 69.0
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 8.0e-113 411.0 305 66.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 8.0e-113 411.0 303 69.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.0e-112 409.1 281 70.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 5.2e-112 408.3 278 70.5
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 8.8e-112 407.5 291 68.7
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.2e-111 407.1 275 70.2
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.5e-111 406.8 295 68.1
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.5e-111 406.8 295 66.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.0e-111 406.4 279 70.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.6e-111 406.0 288 69.4
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 2.6e-111 406.0 298 66.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.4e-111 405.6 284 69.4
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.4e-111 405.2 288 69.1
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 9.8e-111 404.1 302 66.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.7e-110 403.3 291 67.7
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.8e-110 401.7 305 66.6
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 6.3e-110 401.4 305 66.2
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.4e-109 400.2 302 65.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 2.4e-109 399.4 271 70.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.1e-109 397.5 295 67.1
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.2e-108 397.1 294 66.7
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.6e-108 396.7 271 71.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.7e-108 396.0 268 72.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.7e-108 396.0 279 70.3
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 4.5e-108 395.2 282 67.7
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 7.7e-108 394.4 302 65.2
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.0e-107 394.0 294 67.0
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.9e-107 392.5 284 68.3
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 2.9e-107 392.5 278 67.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 8.6e-107 391.0 290 65.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 1.9e-106 389.8 292 65.1
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.6e-105 386.7 288 66.7
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.8e-105 386.0 297 64.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.0e-105 384.4 282 66.0
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.0e-105 384.4 282 66.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 2.3e-104 382.9 292 65.4
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.3e-104 382.9 286 65.7
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 8.9e-104 380.9 272 68.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 8.9e-104 380.9 275 66.5
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 3.4e-103 379.0 287 64.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 4.4e-103 378.6 289 64.4
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 4.4e-103 378.6 301 61.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 5.7e-103 378.3 301 61.5
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 9.8e-103 377.5 285 63.5
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.3e-102 377.1 299 62.5
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.7e-102 376.7 249 73.5
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.9e-102 375.2 299 62.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 6.3e-102 374.8 293 65.2
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.7e-100 369.4 303 60.7
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.7e-100 369.4 289 63.7
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.9e-100 368.2 304 61.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.5e-98 363.6 283 65.7
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.3e-98 362.5 302 60.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.6e-97 360.1 337 58.2
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.8e-97 359.4 255 68.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 8.0e-97 357.8 265 64.9
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.0e-96 357.5 244 71.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.9e-96 354.4 295 62.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.1e-93 347.4 228 71.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-92 344.0 293 58.4
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.0e-91 339.3 215 74.9
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.8e-89 332.8 208 75.0
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.1e-88 330.9 232 66.8
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.1e-88 330.9 368 48.1
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.8e-88 330.1 216 78.2
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 8.9e-88 327.8 301 57.1
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 5.8e-87 325.1 282 57.8
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.9e-86 322.0 253 58.1
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.1e-85 320.9 230 65.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.9e-85 320.1 254 61.8
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.1e-85 318.9 288 57.3
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.7e-84 316.2 217 70.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 4.6e-84 315.5 277 56.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.7e-83 313.5 267 59.9
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 3.0e-83 312.8 290 54.5
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.5e-82 309.7 265 59.2
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.5e-82 309.7 276 55.8
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 3.3e-82 309.3 276 55.8
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 3.3e-82 309.3 276 55.8
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 3.3e-82 309.3 276 55.8
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 4.3e-82 308.9 276 55.1
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.3e-82 308.9 276 55.1
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 9.5e-82 307.8 263 58.2
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.2e-81 307.4 253 56.1
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 3.6e-81 305.8 281 54.8
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.8e-80 303.5 293 54.3
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 3.4e-79 299.3 285 54.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 2.9e-78 296.2 251 59.0
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.4e-78 295.0 213 68.1
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.3e-74 282.3 278 52.2
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.4e-70 268.1 295 49.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 3.9e-67 259.2 219 56.6
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 5.1e-67 258.8 244 54.9
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 9.0e-64 248.1 228 53.9
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.5e-63 247.3 261 49.8
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.1e-56 223.0 285 46.3
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.1e-56 223.0 199 53.8
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.1e-52 210.3 240 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 3.5e-52 209.5 262 44.3
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 6.9e-48 195.3 167 59.3
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.4e-45 187.6 180 56.1
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 8.4e-38 161.8 148 53.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 5.5e-37 159.1 160 50.6
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 6.3e-33 145.6 277 33.9
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.2e-30 137.1 136 55.9
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.3e-27 127.1 222 33.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.0e-23 114.0 79 74.7
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.7e-22 110.9 108 54.6
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 8.8e-19 98.6 60 78.3
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.6e-18 97.1 173 35.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 5.7e-18 95.9 144 36.8
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-14 85.1 49 83.7
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.2e-14 84.0 43 83.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.9e-13 80.9 81 50.6
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.8e-09 67.0 40 75.0
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.2e-07 61.6 220 25.5
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.9e-06 57.0 59 52.5


User provided reference genes

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